View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18900_low_4 (Length: 351)
Name: NF18900_low_4
Description: NF18900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18900_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 46499990 - 46499738
Alignment:
| Q |
1 |
tcaggcatgaaccattttgaaacatcgttataaagcatgcatgcatacgtatcagacataatttaccaacaccacccaatgccgccaccgaaaaagcaaa |
100 |
Q |
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| T |
46499990 |
tcaggcatgaaccattttgaaacatcgttataaagcatgcatgcatacgaatcagacataatttaccaacaccacc-------------gaaaaagcaaa |
46499904 |
T |
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| Q |
101 |
acccgaacagtgatggaggacggagaaccagtcactgagagatctgaatctagatctacccctgtgaaccatccatccaagagggtccccgaaaaccacc |
200 |
Q |
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| T |
46499903 |
acccgaacagtgatggaggacggagaaccagccactgagagatctgaatctagatctacccctgtgaaccatccatccaagagggtccccgaaaaccacc |
46499804 |
T |
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| Q |
201 |
acgagtcgctgcgcaccggcaccaccacaaacctggtgagtgaatgatgcagacgaccaaaaacca |
266 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46499803 |
acgagtcgctgcgcaccggcaccaccacaaacctggtgagtgaatgatgcagacgaccaaaaacca |
46499738 |
T |
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