View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18901_high_1 (Length: 583)
Name: NF18901_high_1
Description: NF18901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18901_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 425; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 62 - 567
Target Start/End: Complemental strand, 5991026 - 5990532
Alignment:
| Q |
62 |
ttttaaatacaaatcacatcaaagggagtctttaaccatttcttttgaaaaccatagaggatatcaatccttaagcaaaaaggttacaaga--gttgaaa |
159 |
Q |
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| T |
5991026 |
ttttaaatacaaatcacatcaaagggagtctttaaccatttcttttgaaaaccatagaggatatcaatccttaagcaaaaaggttacaagatcgttgaaa |
5990927 |
T |
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| Q |
160 |
aacatgccagaggaaacttttctccatgtgcttcatacttaataactcaatcaagagacatgtgggagtgggtttctatgtcaacgtagagaacaaatgg |
259 |
Q |
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| T |
5990926 |
accttgccagaggaaacttttctccatgtgcttcatagttaataactcaatcaagagacatgtgggagtgggattctgtgtcaacgtagataacaaatgg |
5990827 |
T |
|
| Q |
260 |
tagtgtgtcaacataaagtttcaatttccaactttctaaatttagtagaaatgaagaacacaaggtatgtaaactagtacggttatatctttgcataatg |
359 |
Q |
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| T |
5990826 |
tagtgtgtcaacataaagtttcaatttccaactttctaaatttagtagaaatgaagaacacaaggtatgtaaactagtacggttatatctttgcataatg |
5990727 |
T |
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| Q |
360 |
caaatacggttaagatctttagtacgaatggtccatatacattatgatgaacttttctcgtgattctatatacactggttcgttacctctttgccattgt |
459 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |
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| T |
5990726 |
caaatacggttaagatctttagtacgaatggtccatatacattatgatgaacttttctcatgattctata-------------tacctctttgccattgt |
5990640 |
T |
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| Q |
460 |
catatgcctcataccccaccataaaaccctacaaatacaagctcatgtgcagagagaagtaataataattccatatcacaatccagggaacactttggtg |
559 |
Q |
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| T |
5990639 |
catatgcctcataccccaccataaaaccctacaaatacaagctcatgtgcagagagaagtaataataattccatatcacaatccagggaacactttggtg |
5990540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 9 - 55
Target Start/End: Complemental strand, 5991110 - 5991064
Alignment:
| Q |
9 |
gagaagaaagatagacacaaaaaatgatattaggacctcaagtttga |
55 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
5991110 |
gagaagaaagatagacacaaaaaatgatattaggacctcaaatttga |
5991064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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