View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18901_high_12 (Length: 354)
Name: NF18901_high_12
Description: NF18901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18901_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 27681635 - 27681826
Alignment:
| Q |
1 |
cctccatattttcccacaactgaaagttgctacttttccatatactccataatattgtgcaccatttgttgtgttgcaccagtatcaggtgtgccatcaa |
100 |
Q |
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| T |
27681635 |
cctccatattttcccacaactgaaagttgctacttttccatatactccataatattgtgcaccatttgttgtgttgcaccagtataaggtgtgccatcaa |
27681734 |
T |
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| Q |
101 |
tcttgaagaaaatgtccttcatgacatctgcattccataatggcaagatggtatgcaccatatatatcaaagtgtcttcttccatgagttgc |
192 |
Q |
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| T |
27681735 |
tcttgaagaaaatgtccttcatgacatctgcattccataatggcaagatggtatgcaccatatatatcaaagtgtcttcttccatgagttgc |
27681826 |
T |
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Target: chr7; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 251 - 345
Target Start/End: Original strand, 27681881 - 27681975
Alignment:
| Q |
251 |
ggtatttgacctaaattaatattccatgagttgtaaaagaagacacatatctttaatataaagcacggagtgacttagcttcacataatattctt |
345 |
Q |
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| T |
27681881 |
ggtatttgacctaaattaatatttcatgagttgtaaaagaagacacatatctttaatataaagcacggagtaacttagcttcacataattttctt |
27681975 |
T |
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