View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18901_high_2 (Length: 519)
Name: NF18901_high_2
Description: NF18901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18901_high_2 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 17 - 519
Target Start/End: Original strand, 22882243 - 22882734
Alignment:
| Q |
17 |
tagagccatgagagcatgaaaatactatccgattccataaggatgagtgacaacaattaggaatagacgcgatcctcaaagttagcacagcgattaatag |
116 |
Q |
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| T |
22882243 |
tagagccatgagagcatgaaaatactatccgattccataaggatgagtgacaacaattagtaatagacgcgatcctcaaagttagcacagcaattaagag |
22882342 |
T |
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| Q |
117 |
actctgatgatcctgaacagaggaatgaagaatgccatttcattctacttagttgattctgtctgaatctgaaggattgttattatattcacttcactat |
216 |
Q |
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| T |
22882343 |
tctctgatggtcctgaacagaggaatgaagaatgccatttcattctacttagttgattctgtctgaatctgaaggattgttattatattcacttcactat |
22882442 |
T |
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| Q |
217 |
ccatcaagatcaagatttgtgtgctaattactttaaatccaatcaactcctcccaaatggatagttaagttcagcaatatttatgaaacaaaaacaatct |
316 |
Q |
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| T |
22882443 |
ccatcaagat------ttgtgtgctaattactttaaatccaatcaactcctcccaaatggatagttaagttcagcaat--ttatgaaacaaaaacaatct |
22882534 |
T |
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| Q |
317 |
aaaacaaacggtttatctgtgtggcaccgacacttcaaattgaaggtgtgttcagtgtctgacttatcgtcggtgcccggcacgttcaattacttccatt |
416 |
Q |
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| T |
22882535 |
aaaacaaacggtttatctatgtggcaccgacacttcaaattgaaggtgtgttcagtgtctgacttatcg---gtgcccggcacgttcaattacttccatt |
22882631 |
T |
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| Q |
417 |
ctttcaaattattattgatgtctacgtgtcagtagtatctgtttgtgtttcatacaagtctattgtagtatacacaatctatttggtaatggatagcaaa |
516 |
Q |
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| T |
22882632 |
cttttaaattattattggtgtctacgtgtcagtagtatctgttagtgtttcatacaagtctattgtagtataaacaatctatttggtaatggatagcaaa |
22882731 |
T |
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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 379
Target Start/End: Complemental strand, 19173900 - 19173861
Alignment:
| Q |
340 |
gcaccgacacttcaaattgaaggtgtgttcagtgtctgac |
379 |
Q |
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| T |
19173900 |
gcaccgacacttcagattgaaggtgtattcagtgtctgac |
19173861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 450
Target Start/End: Original strand, 7250985 - 7251034
Alignment:
| Q |
401 |
ttcaattacttccattctttcaaattattattgatgtctacgtgtcagta |
450 |
Q |
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| T |
7250985 |
ttcaattactttcattttctcaaattattattggtgtcaacgtgtcagta |
7251034 |
T |
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