View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18901_high_22 (Length: 250)
Name: NF18901_high_22
Description: NF18901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18901_high_22 |
 | |
|
| [»] chr3 (14 HSPs) |
| |
|
| [»] chr2 (11 HSPs) |
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| [»] chr5 (5 HSPs) |
| |
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| [»] chr1 (9 HSPs) |
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| [»] chr6 (5 HSPs) |
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| [»] chr8 (6 HSPs) |
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| [»] chr4 (10 HSPs) |
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| [»] chr7 (3 HSPs) |
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| [»] scaffold0854 (1 HSPs) |
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| [»] scaffold0286 (1 HSPs) |
| | |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 14)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 8 - 250
Target Start/End: Complemental strand, 51225586 - 51225345
Alignment:
| Q |
8 |
ccaagaaaatcagaacaaacacatactgtttacattattaaaagtatagtgattgtttctatttatatttcctcatcaactctgttgatgaatgctacaa |
107 |
Q |
| |
|
|||| ||||||||||||| |||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
51225586 |
ccaaaaaaatcagaacaatcacatactatttacattattaaaagtataatgatagtttctatttatatttcctcatcaactctgtt-atgaatgctacaa |
51225488 |
T |
|
| Q |
108 |
ctagtttacatgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcgaagcaaatccatg |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
51225487 |
ctagtttacatgtgtttgaaaaattagaatgacactttatttcctcgtgtttctggttacaattcgaatacgagagagattcaatcggagcaaatccatg |
51225388 |
T |
|
| Q |
208 |
gtggtgatgaagcagtggcagaaagcttcaagattttggaaca |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51225387 |
gtggtgatgaagcagtggcagaaagcttcaagattttggaaca |
51225345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 8 - 220
Target Start/End: Original strand, 55094040 - 55094252
Alignment:
| Q |
8 |
ccaagaaaatcagaacaaacacatactgtttacattattaaaagtatagtgattgtttctatttatatttcctcatcaactctgttgatgaatgctacaa |
107 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
55094040 |
ccaaaaaaatcagaacaatcacatactgtttacattattaaaagtataatgatagtttctatttatatttcctcatcaactctgttcatgaatgctacaa |
55094139 |
T |
|
| Q |
108 |
ctagtttacatgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcgaagcaaatccatg |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
55094140 |
ctagtttacatgtgtttgaaaaattagaatgtcactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcggagcaaatccatg |
55094239 |
T |
|
| Q |
208 |
gtggtgatgaagc |
220 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
55094240 |
gtggtgataaagc |
55094252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 35494598 - 35494833
Alignment:
| Q |
13 |
aaaatcagaacaaacacatactgtttacattattaaaagtatagtgattgtttctatttatatttcctcatcaactctgttgatgaatgctacaactagt |
112 |
Q |
| |
|
||||| ||||||| |||||||| |||||||||||||||||||| |||| ||||| |||||||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
35494598 |
aaaataagaacaatcacatactatttacattattaaaagtataatgatagtttcaatttatatttcctcatcatctctgttcctgaatgctacaactagt |
35494697 |
T |
|
| Q |
113 |
ttacatgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcgaagcaaatccatggtggt |
212 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
35494698 |
ttacctgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatac--gagagattcaatcggagcaaatccatggtggt |
35494795 |
T |
|
| Q |
213 |
gatgaagcagtggcagaaagcttcaagattttggaaca |
250 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
35494796 |
gatgaagtagtggcagaaagcttcaagattttggaaca |
35494833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 8 - 250
Target Start/End: Original strand, 32771504 - 32771746
Alignment:
| Q |
8 |
ccaagaaaatcagaacaaacacatactgtttacattattaaaagtatagtgattgtttctatttatatttcctcatcaactctgttgatgaatgctacaa |
107 |
Q |
| |
|
|||| ||||||||||||| |||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
32771504 |
ccaaaaaaatcagaacaatcacatattgtttacattattaaaagtataatgatagtttctatttatatttcctcatcaactctattcctgaatgctacaa |
32771603 |
T |
|
| Q |
108 |
ctagtttacatgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcgaagcaaatccatg |
207 |
Q |
| |
|
|||| |||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||| |||| |
|
|
| T |
32771604 |
ctagattacatgtgtttaaaaaattagaatgtcactttacttcctcgtgattctggttacaattcgaatatgagagagattcaatcagagcaaattcatg |
32771703 |
T |
|
| Q |
208 |
gtggtgatgaagcagtggcagaaagcttcaagattttggaaca |
250 |
Q |
| |
|
||| ||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
32771704 |
gtgttgatgaagcagtgacagaaagcttcaagattttggaaca |
32771746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 31 - 250
Target Start/End: Original strand, 36316755 - 36316974
Alignment:
| Q |
31 |
tactgtttacattattaaaagtatagtgattgtttctatttatatttcctcatcaactctgttgatgaatgctacaactagtttacatgtgtttgaaaaa |
130 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |
|
|
| T |
36316755 |
tactgtttacattattaaaagtataatgatactttatatttatatttcctcatcaactctgttcctgaatgctacaactagtttacttgtgtttgaaaaa |
36316854 |
T |
|
| Q |
131 |
ttagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcgaagcaaatccatggtggtgatgaagcagtggcagaa |
230 |
Q |
| |
|
||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| || |
|
|
| T |
36316855 |
ttagaatgccactttactttctcgtgtttcagattacaattcgaatacgagagagattcaatcggagcaaatccatggtggtgatgaagcggtggcaaaa |
36316954 |
T |
|
| Q |
231 |
agcttcaagattttggaaca |
250 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
36316955 |
agcttcaagattttggaaca |
36316974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 8 - 220
Target Start/End: Complemental strand, 17257228 - 17257016
Alignment:
| Q |
8 |
ccaagaaaatcagaacaaacacatactgtttacattattaaaagtatagtgattgtttctatttatatttcctcatcaactctgttgatgaatgctacaa |
107 |
Q |
| |
|
|||| ||||||||||||| || ||| |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
17257228 |
ccaaaaaaatcagaacaatcaaataatgtttacattattaaaagtataatgatagtttctatttatatttcctcatcaactctgttcctaaatgctacaa |
17257129 |
T |
|
| Q |
108 |
ctagtttacatgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcgaagcaaatccatg |
207 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |
|
|
| T |
17257128 |
ctagtttacctgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaatttgaatacgagagagattcaatcggagcaaatccatg |
17257029 |
T |
|
| Q |
208 |
gtggtgatgaagc |
220 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
17257028 |
gtggtgataaagc |
17257016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 29 - 220
Target Start/End: Complemental strand, 50380707 - 50380516
Alignment:
| Q |
29 |
catactgtttacattattaaaagtatagtgattgtttctatttatatttcctcatcaactctgttgatgaatgctacaactagtttacatgtgtttgaaa |
128 |
Q |
| |
|
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||| |
|
|
| T |
50380707 |
catactgtttacattattaaaagtataatgatagtttctatttatatttcctcatcaactctgttcctgaatgttacaactagtttacctgtgtttgaaa |
50380608 |
T |
|
| Q |
129 |
aattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcgaagcaaatccatggtggtgatgaagc |
220 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||| |||| |
|
|
| T |
50380607 |
aattagaatgccattttacttcctcgtgtttctggtcacaattcgaatacgagagatattcaatcggagcaaatccatggtggtgataaagc |
50380516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 8 - 220
Target Start/End: Complemental strand, 5635994 - 5635782
Alignment:
| Q |
8 |
ccaagaaaatcagaacaaacacatactgtttacattattaaaagtatagtgattgtttctatttatatttcctcatcaactctgttgatgaatgctacaa |
107 |
Q |
| |
|
|||| ||||||||||||| |||||| |||||||||||||||||||||| || | ||||||||||||||| | |||||||||||||| | || ||||||| |
|
|
| T |
5635994 |
ccaaaaaaatcagaacaatcacatattgtttacattattaaaagtataatggtagtttctatttatattccatcatcaactctgtttctaaaagctacaa |
5635895 |
T |
|
| Q |
108 |
ctagtttacatgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcgaagcaaatccatg |
207 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |
|
|
| T |
5635894 |
ctagtttacctgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcggagcaaattcata |
5635795 |
T |
|
| Q |
208 |
gtggtgatgaagc |
220 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
5635794 |
gtggtgataaagc |
5635782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 86 - 250
Target Start/End: Original strand, 33446760 - 33446924
Alignment:
| Q |
86 |
actctgttgatgaatgctacaactagtttacatgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagag |
185 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
33446760 |
actctgttcctgaatgctacaactagtttacctgtgtttgaaaaattagaatgtcactttacttcctcgtgtttctggttacaattcgaatacgagaaag |
33446859 |
T |
|
| Q |
186 |
attcaatcgaagcaaatccatggtggtgatgaagcagtggcagaaagcttcaagattttggaaca |
250 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
33446860 |
attcaatcggagcaaatccatggtggtgatgaagcagtgacagaaagcttcaagattttggaaca |
33446924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 109 - 250
Target Start/End: Complemental strand, 49002224 - 49002083
Alignment:
| Q |
109 |
tagtttacatgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcgaagcaaatccatgg |
208 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
49002224 |
tagtttacctgtgtttgaaaaattagaatgtcactttacttcctcgtgtttttagttacaattcgaatacgagagagattcaatcggagcaaatccatgg |
49002125 |
T |
|
| Q |
209 |
tggtgatgaagcagtggcagaaagcttcaagattttggaaca |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49002124 |
tggtgatgaagcagtggcagaaagcttcaagattttggaaca |
49002083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 8 - 113
Target Start/End: Original strand, 2182194 - 2182299
Alignment:
| Q |
8 |
ccaagaaaatcagaacaaacacatactgtttacattattaaaagtatagtgattgtttctatttatatttcctcatcaactctgttgatgaatgctacaa |
107 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
2182194 |
ccaaaaaaatcagaacaatcacatactgtttacattattaaaagtataatgatagtttcaatttatatttcctcatcaactctgttcctgaatgctacaa |
2182293 |
T |
|
| Q |
108 |
ctagtt |
113 |
Q |
| |
|
|||||| |
|
|
| T |
2182294 |
ctagtt |
2182299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 106 - 194
Target Start/End: Complemental strand, 10730879 - 10730791
Alignment:
| Q |
106 |
aactagtttacatgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcg |
194 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||| |||| |||||||||||||||||||||| |
|
|
| T |
10730879 |
aactagtttacctgtgtttgaaaaattagaattccactttacttcctcgtgtttttggttaaaatttgaatacgagagagattcaatcg |
10730791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 163 - 220
Target Start/End: Original strand, 2182297 - 2182354
Alignment:
| Q |
163 |
gttacaattcgaatacgagagagattcaatcgaagcaaatccatggtggtgatgaagc |
220 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||| |
|
|
| T |
2182297 |
gttacaattcgaatacgagagagatttaatcggagcaaatccatggtggtgataaagc |
2182354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 202 - 250
Target Start/End: Complemental strand, 54476518 - 54476470
Alignment:
| Q |
202 |
tccatggtggtgatgaagcagtggcagaaagcttcaagattttggaaca |
250 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
54476518 |
tccatggtggtgatgaaatagtggcagaaatcttcaagattttggaaca |
54476470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 11)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 11364484 - 11364247
Alignment:
| Q |
13 |
aaaatcagaacaaacacatactgtttacattattaaaagtatagtgattgtttctatttatatttcctcatcaactctgttgatgaatgctacaactagt |
112 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
11364484 |
aaaatcagaacaatcacatactgtttacattattaaaagtataatgatagtttctatttatatttcctcatcaactctgttcctgaatgctacaactagt |
11364385 |
T |
|
| Q |
113 |
ttacatgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcgaagcaaatccatggtggt |
212 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
11364384 |
ttacctgtgattgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcggagcaaatccatggtggt |
11364285 |
T |
|
| Q |
213 |
gatgaagcagtggcagaaagcttcaagattttggaaca |
250 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
11364284 |
gatgaagcagtggtagaaagcttcaagattttggaaca |
11364247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 8 - 250
Target Start/End: Original strand, 8667027 - 8667269
Alignment:
| Q |
8 |
ccaagaaaatcagaacaaacacatactgtttacattattaaaagtatagtgattgtttctatttatatttcctcatcaactctgttgatgaatgctacaa |
107 |
Q |
| |
|
|||| ||||||| ||||| ||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
8667027 |
ccaaaaaaatcataacaatcacatactgtttacattattaaaagtataatgatagtttcaatttatatttcctcatcaactctgttactgattgctacaa |
8667126 |
T |
|
| Q |
108 |
ctagtttacatgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcgaagcaaatccatg |
207 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
8667127 |
ctagtttacctgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattagaatacgagagagattcaatcagagcaaatccatg |
8667226 |
T |
|
| Q |
208 |
gtggtgatgaagcagtggcagaaagcttcaagattttggaaca |
250 |
Q |
| |
|
|| ||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
8667227 |
gtagtgatgaagaagtggcagaaagcttcaagattttggaaca |
8667269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 43890762 - 43890525
Alignment:
| Q |
13 |
aaaatcagaacaaacacatactgtttacattattaaaagtatagtgattgtttctatttatatttcctcatcaactctgttgatgaatgctacaactagt |
112 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
43890762 |
aaaatcagaacaatcacatactatttacattattaaaagtataatgatagtttctatttatatttcctcatcaacttcgttcatgaatgctacaactagt |
43890663 |
T |
|
| Q |
113 |
ttacatgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcgaagcaaatccatggtggt |
212 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
43890662 |
ttacctgtgtttgaaaaattagaatgtcactttacttccccgtgtttcaggttacaattcgaatacgagagagattcaatcaaagcaaatccatggtggt |
43890563 |
T |
|
| Q |
213 |
gatgaagcagtggcagaaagcttcaagattttggaaca |
250 |
Q |
| |
|
| |||||||||| ||||||||||||||||||||||||| |
|
|
| T |
43890562 |
ggtgaagcagtgacagaaagcttcaagattttggaaca |
43890525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 3 - 215
Target Start/End: Original strand, 44077940 - 44078152
Alignment:
| Q |
3 |
gatctccaagaaaatcagaacaaacacatactgtttacattattaaaagtatagtgattgtttctatttatatttcctcatcaactctgttgatgaatgc |
102 |
Q |
| |
|
||||||| | ||||||||||||| |||||| |||||||||||| ||||||||| |||| |||||||||||||||| |||||||||| |||| ||||||| |
|
|
| T |
44077940 |
gatctcccaaaaaatcagaacaatcacatattgtttacattatcaaaagtataatgatagtttctatttatattttctcatcaactatgttcgtgaatgc |
44078039 |
T |
|
| Q |
103 |
tacaactagtttacatgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcgaagcaaat |
202 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||| |
|
|
| T |
44078040 |
tacaactagtttacctgtgtttgaaaaattataatgccactttacttcctcgtgtttctggttacaattcgaatacgagagaaattcaatgggagcaaat |
44078139 |
T |
|
| Q |
203 |
ccatggtggtgat |
215 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
44078140 |
ccacggtggtgat |
44078152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 8 - 215
Target Start/End: Complemental strand, 23048930 - 23048724
Alignment:
| Q |
8 |
ccaagaaaatcagaacaaacacatactgtttacattattaaaagtatagtgattgtttctatttatatttcctcatcaactctgttgatgaatgctacaa |
107 |
Q |
| |
|
|||| ||| ||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
23048930 |
ccaaaaaattcagaacaatcacatactgtttacattattaaaagtataatgatagtttctatttatatttcctcatcaactctgttcctgaatgctacaa |
23048831 |
T |
|
| Q |
108 |
ctagtttacatgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcgaagcaaatccatg |
207 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||| |||||||||||||| ||||||| |||| |
|
|
| T |
23048830 |
ctagtttacctgtgtttgaaaaattagaatgccgctttacttcctcgtgtttct-gttacaatttgaatacctgagagattcaatcggagcaaattcatg |
23048732 |
T |
|
| Q |
208 |
gtggtgat |
215 |
Q |
| |
|
|||||||| |
|
|
| T |
23048731 |
gtggtgat |
23048724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 8 - 215
Target Start/End: Complemental strand, 21632436 - 21632234
Alignment:
| Q |
8 |
ccaagaaaatcagaacaaacacatactgtttacattattaaaagtatagtgattgtttctatttatatttcctcatcaactctgttgatgaatgctacaa |
107 |
Q |
| |
|
|||| ||||||| ||||| ||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||| |||| |||||||||||| |
|
|
| T |
21632436 |
ccaaaaaaatcaaaacaatcacatactgtttacattattaaaagtataatgatattttctatttatat-----catcaactttgttcctgaatgctacaa |
21632342 |
T |
|
| Q |
108 |
ctagtttacatgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcgaagcaaatccatg |
207 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
21632341 |
ctagtttacctgagtttgaaaaattagaatgccactttacttcctcgtgtttttggttacaattcgaatacgaaagagattcaatcggagcaaatccatg |
21632242 |
T |
|
| Q |
208 |
gtggtgat |
215 |
Q |
| |
|
|||||||| |
|
|
| T |
21632241 |
gtggtgat |
21632234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 109 - 206
Target Start/End: Original strand, 28732754 - 28732850
Alignment:
| Q |
109 |
tagtttacatgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcgaagcaaatccat |
206 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
28732754 |
tagtttacatgtgtttgaaaaat-agaataccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcggagcaaatccat |
28732850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 202 - 250
Target Start/End: Complemental strand, 16144117 - 16144069
Alignment:
| Q |
202 |
tccatggtggtgatgaagcagtggcagaaagcttcaagattttggaaca |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16144117 |
tccatggtggtgatgaagcagtggcagaaagcttcaagattttggaaca |
16144069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 169 - 245
Target Start/End: Original strand, 34055833 - 34055909
Alignment:
| Q |
169 |
attcgaatacgagagagattcaatcgaagcaaatccatggtggtgatgaagcagtggcagaaagcttcaagattttg |
245 |
Q |
| |
|
||||||| |||||||||||| |||| |||||||||||||||||| ||||||||| |||||||||||| |||||||| |
|
|
| T |
34055833 |
attcgaacacgagagagatttgatcggagcaaatccatggtggtgttgaagcagttgcagaaagcttcgagattttg |
34055909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 45 - 114
Target Start/End: Original strand, 28720810 - 28720879
Alignment:
| Q |
45 |
ttaaaagtatagtgattgtttctatttatatttcctcatcaactctgttgatgaatgctacaactagttt |
114 |
Q |
| |
|
||||||||||| |||| ||||||||||||||| |||||||||||| || ||||||||||||||||||| |
|
|
| T |
28720810 |
ttaaaagtataatgataatttctatttatatttactcatcaactctattcctgaatgctacaactagttt |
28720879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 28720264 - 28720309
Alignment:
| Q |
8 |
ccaagaaaatcagaacaaacacatactgtttacattattaaaagta |
53 |
Q |
| |
|
|||| ||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
28720264 |
ccaaaaaaatcagaacaatcacatactttttacattattaaaagta |
28720309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 8 - 250
Target Start/End: Original strand, 38163127 - 38163369
Alignment:
| Q |
8 |
ccaagaaaatcagaacaaacacatactgtttacattattaaaagtatagtgattgtttctatttatatttcctcatcaactctgttgatgaatgctacaa |
107 |
Q |
| |
|
|||| ||||||||||||| |||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
38163127 |
ccaaaaaaatcagaacaatcacatattgtttacattattaaaagtataatgacagtttctatttatatttcctcatcaactctgttcctgaatgctacaa |
38163226 |
T |
|
| Q |
108 |
ctagtttacatgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcgaagcaaatccatg |
207 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
38163227 |
ctagtttacctgtgtttgaaaaattagaatgccattttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcggagcaaatccatg |
38163326 |
T |
|
| Q |
208 |
gtggtgatgaagcagtggcagaaagcttcaagattttggaaca |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38163327 |
gtggtgatgaagcagtggcagaaagcttcaagattttggaaca |
38163369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 7 - 250
Target Start/End: Complemental strand, 4888050 - 4887807
Alignment:
| Q |
7 |
tccaagaaaatcagaacaaacacatactgtttacattattaaaagtatagtgattgtttctatttatatttcctcatcaactctgttgatgaatgctaca |
106 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||| ||| ||||||||||| |
|
|
| T |
4888050 |
tccaaaaaaatcagaacaatcacatactgtttacattattaaaagtataatgatagtttctatttatatttcctcgtcaactcggttcctgaatgctaca |
4887951 |
T |
|
| Q |
107 |
actagtttacatgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcgaagcaaatccat |
206 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
4887950 |
actagtttacctgtgtttgaaaaattagaatgtcacttcacttcctcgtgtttctggttacaattcgaatacgagagtgattcaatcggagcaaatccat |
4887851 |
T |
|
| Q |
207 |
ggtggtgatgaagcagtggcagaaagcttcaagattttggaaca |
250 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
4887850 |
ggtggtgatgaagcagtggcagaaagctttaagattttggaaca |
4887807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 8 - 220
Target Start/End: Complemental strand, 38974056 - 38973844
Alignment:
| Q |
8 |
ccaagaaaatcagaacaaacacatactgtttacattattaaaagtatagtgattgtttctatttatatttcctcatcaactctgttgatgaatgctacaa |
107 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
38974056 |
ccaaaaaaatcagaacaatcacatactgtttacattattaaaagtataaggatagtttctatttatatttcctcatcaactttgttcctgaatgctacaa |
38973957 |
T |
|
| Q |
108 |
ctagtttacatgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcgaagcaaatccatg |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
38973956 |
ctagtttacatgtgtttgaaaaattagaatgtcactttacttccttatgtttctggttacaattcgaatacgagagagattcaatcggagcaaatccatg |
38973857 |
T |
|
| Q |
208 |
gtggtgatgaagc |
220 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
38973856 |
gtggtgataaagc |
38973844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 13 - 215
Target Start/End: Original strand, 26365489 - 26365691
Alignment:
| Q |
13 |
aaaatcagaacaaacacatactgtttacattattaaaagtatagtgattgtttctatttatatttcctcatcaactctgttgatgaatgctacaactagt |
112 |
Q |
| |
|
||||||||||||| |||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||| | || ||||||||||||||||| |
|
|
| T |
26365489 |
aaaatcagaacaatcacatactgttttcattattaaaagtataatgatagtttctatttatatttcctcatcaactatattcctgaatgctacaactagt |
26365588 |
T |
|
| Q |
113 |
ttacatgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcgaagcaaatccatggtggt |
212 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||| |
|
|
| T |
26365589 |
ttacctgtgtttgaaaaattagaatgtcactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatgggagcaaatccatggcggt |
26365688 |
T |
|
| Q |
213 |
gat |
215 |
Q |
| |
|
||| |
|
|
| T |
26365689 |
gat |
26365691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 202 - 250
Target Start/End: Original strand, 41082947 - 41082995
Alignment:
| Q |
202 |
tccatggtggtgatgaagcagtggcagaaagcttcaagattttggaaca |
250 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
41082947 |
tccatggtggtgatgaagtagtggcagaaagctttaagattttggaaca |
41082995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 21259459 - 21259695
Alignment:
| Q |
13 |
aaaatcagaacaaacacatactgtttacattattaaaagtatagtgattgtttctatttatatttcctcatcaactctgttgatgaatgctacaactagt |
112 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
21259459 |
aaaatcagaacaatcacatactgtttacattattaaaagtataatgatagtttctttttatatttcctcatcaactctattcatgaatgctacaactagt |
21259558 |
T |
|
| Q |
113 |
ttacatgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcgaagcaaatccatggtggt |
212 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
21259559 |
ttacatgtgtttgaaaa-ttagaatgccactttacttcctcgtgtttatggttacaattcgaatacgagagagattcaatcggagcaaatccatggtggt |
21259657 |
T |
|
| Q |
213 |
gatgaagcagtggcagaaagcttcaagattttggaaca |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21259658 |
gatgaagcagtggcagaaagcttcaagattttggaaca |
21259695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 8 - 250
Target Start/End: Complemental strand, 49696023 - 49695781
Alignment:
| Q |
8 |
ccaagaaaatcagaacaaacacatactgtttacattattaaaagtatagtgattgtttctatttatatttcctcatcaactctgttgatgaatgctacaa |
107 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
49696023 |
ccaaaaaaatcagaacaatcacatactgtttacattattaaaagtataatgacagtttctatttatattttctcatcaactctgttcctgaatgctacaa |
49695924 |
T |
|
| Q |
108 |
ctagtttacatgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcgaagcaaatccatg |
207 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
49695923 |
ctagtttacctgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagatttaatcggagcaaatccatg |
49695824 |
T |
|
| Q |
208 |
gtggtgatgaagcagtggcagaaagcttcaagattttggaaca |
250 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
49695823 |
gtggtgatgaagcaatggcagaaagcttcaaaattttggaaca |
49695781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 16 - 250
Target Start/End: Original strand, 4475663 - 4475897
Alignment:
| Q |
16 |
atcagaacaaacacatactgtttacattattaaaagtatagtgattgtttctatttatatttcctcatcaactctgttgatgaatgctacaactagttta |
115 |
Q |
| |
|
|||||||||| |||||| |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
4475663 |
atcagaacaatcacatattgtttacattattaaaagtataatgatagtttctatttatatttcctcatcaactctgttcctgaatgctacaactagttta |
4475762 |
T |
|
| Q |
116 |
catgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcgaagcaaatccatggtggtgat |
215 |
Q |
| |
|
| ||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
4475763 |
cctgtgtttgaaaaattagaatgtcactttacttcttcgtgtttctggttagaattcgaatacgagagagattcaatcggagcaaatccatggtagtgat |
4475862 |
T |
|
| Q |
216 |
gaagcagtggcagaaagcttcaagattttggaaca |
250 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| |
|
|
| T |
4475863 |
gaagcagtggcagaaaacttcaagattttggaaca |
4475897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 8 - 250
Target Start/End: Complemental strand, 51549016 - 51548775
Alignment:
| Q |
8 |
ccaagaaaatcagaacaaacacatactgtttacattattaaaagtatagtgattgtttctatttatatttcctcatcaactctgttgatgaatgctacaa |
107 |
Q |
| |
|
|||| ||||||||||||| | |||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
51549016 |
ccaaaaaaatcagaacaatcgcatattgtttacattattaaaagtataatgatagtttctatttatatttcctcatcaactttgttcctgaatgctacaa |
51548917 |
T |
|
| Q |
108 |
ctagtttacatgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcgaagcaaatccatg |
207 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
51548916 |
ctagtttacctgtgtttgaaaaattagaatgccactttacctcctcgtgtttctagttacaattcgaatacgagagagattcaatcggagcaaatccat- |
51548818 |
T |
|
| Q |
208 |
gtggtgatgaagcagtggcagaaagcttcaagattttggaaca |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51548817 |
gtggtgatgaagcagtggcagaaagcttcaagattttggaaca |
51548775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 8 - 220
Target Start/End: Original strand, 50877286 - 50877498
Alignment:
| Q |
8 |
ccaagaaaatcagaacaaacacatactgtttacattattaaaagtatagtgattgtttctatttatatttcctcatcaactctgttgatgaatgctacaa |
107 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
50877286 |
ccaaaaaaatcagaacaatcacatactgtttacatcattaaaagtataatgatagtttctatttatatttcctcatcaactctatttctgaatgctacaa |
50877385 |
T |
|
| Q |
108 |
ctagtttacatgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcgaagcaaatccatg |
207 |
Q |
| |
|
||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
|
|
| T |
50877386 |
ctagtttacctgtgtttgaaaaattagaatgtcactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcggagcaaatctatg |
50877485 |
T |
|
| Q |
208 |
gtggtgatgaagc |
220 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
50877486 |
gtggtgataaagc |
50877498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 8 - 186
Target Start/End: Complemental strand, 50504069 - 50503891
Alignment:
| Q |
8 |
ccaagaaaatcagaacaaacacatactgtttacattattaaaagtatagtgattgtttctatttatatttcctcatcaactctgttgatgaatgctacaa |
107 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
50504069 |
ccaaaaaaatcagaacaatcacatactgtttacattattaaaagtataatgatagtttctatttatattttctcatcaactctgttcctgaatgctacaa |
50503970 |
T |
|
| Q |
108 |
ctagtttacatgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagaga |
186 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50503969 |
ctagtttacctgtgtttgaaaaattagaatgccattttacttcctcgtgtttctggttacaattcgaatacgagagaga |
50503891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 57 - 250
Target Start/End: Complemental strand, 39277576 - 39277383
Alignment:
| Q |
57 |
tgattgtttctatttatatttcctcatcaactctgttgatgaatgctacaactagtttacatgtgtttgaaaaattagaatgccactttacttcctcgtg |
156 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
39277576 |
tgatagtttctatttatatttcctcatcaactctgttcctgaatgctacaactagtttacctgtgtttgaaaaattagaatgtcactttacttcctcgtg |
39277477 |
T |
|
| Q |
157 |
tttctggttacaattcgaatacgagagagattcaatcgaagcaaatccatggtggtgatgaagcagtggcagaaagcttcaagattttggaaca |
250 |
Q |
| |
|
||| ||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||| ||||||||||| |||||| ||||||||||| |
|
|
| T |
39277476 |
tttatggttacaattcgaataggagagagattcaatcgtagcaaatccatgttggtgatgaactagtggcagaaaacttcaaaattttggaaca |
39277383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 96 - 213
Target Start/End: Complemental strand, 7057474 - 7057357
Alignment:
| Q |
96 |
tgaatgctacaactagtttacatgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcga |
195 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
7057474 |
tgaatgctacaattagtttacctgtgtttgaaaaattagaataccactttacctcctcgtgtttttggttacaattcgaatacgagagagattcaatcgg |
7057375 |
T |
|
| Q |
196 |
agcaaatccatggtggtg |
213 |
Q |
| |
|
||||||||||||| |||| |
|
|
| T |
7057374 |
agcaaatccatggcggtg |
7057357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 179 - 238
Target Start/End: Complemental strand, 50503866 - 50503807
Alignment:
| Q |
179 |
gagagagattcaatcgaagcaaatccatggtggtgatgaagcagtggcagaaagcttcaa |
238 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
50503866 |
gagagagattcaatcggagcaaatccatggtggtgatgaagcagtggcataaagcttcaa |
50503807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 29873703 - 29873466
Alignment:
| Q |
13 |
aaaatcagaacaaacacatactgtttacattattaaaagtatagtgattgtttctatttatatttcctcatcaactctgttgatgaatgctacaactagt |
112 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
29873703 |
aaaatcagaacaatcacatactgtttacattattaaaagtataatgatagtttctatttatatttcctcatcaactttgttcctgaatgctacaactagt |
29873604 |
T |
|
| Q |
113 |
ttacatgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcgaagcaaatccatggtggt |
212 |
Q |
| |
|
|||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
29873603 |
ttacctgtgtttaaaaaattagaatgtcactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcggagcaaatccatggtggt |
29873504 |
T |
|
| Q |
213 |
gatgaagcagtggcagaaagcttcaagattttggaaca |
250 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
29873503 |
gatgaagcagtggtagaaagcttcaagattttggaaca |
29873466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 8 - 250
Target Start/End: Original strand, 2017923 - 2018165
Alignment:
| Q |
8 |
ccaagaaaatcagaacaaacacatactgtttacattattaaaagtatagtgattgtttctatttatatttcctcatcaactctgttgatgaatgctacaa |
107 |
Q |
| |
|
|||| ||||||||||||| |||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
2017923 |
ccaaaaaaatcagaacaatcacatactgtctacattattaaaagtataatgatagtttctatttatatttcctcatcaactttgttcctgaatgctacaa |
2018022 |
T |
|
| Q |
108 |
ctagtttacatgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcgaagcaaatccatg |
207 |
Q |
| |
|
||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
2018023 |
ctagtttacctgtgtttgaaaaattaaaatgtcactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaattggagcaaatccatg |
2018122 |
T |
|
| Q |
208 |
gtggtgatgaagcagtggcagaaagcttcaagattttggaaca |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2018123 |
gtggtgatgaagcagtggcagaaagcttcaagattttggaaca |
2018165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 13 - 215
Target Start/End: Complemental strand, 4792922 - 4792720
Alignment:
| Q |
13 |
aaaatcagaacaaacacatactgtttacattattaaaagtatagtgattgtttctatttatatttcctcatcaactctgttgatgaatgctacaactagt |
112 |
Q |
| |
|
||||||||||||| |||||| |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
4792922 |
aaaatcagaacaatcacatattgtttacattattaaaagtataatgatagtttctatttatatttcctcatcaactctgttcctgaatgctacaactagt |
4792823 |
T |
|
| Q |
113 |
ttacatgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcgaagcaaatccatggtggt |
212 |
Q |
| |
|
||| | ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| | |||||| |
|
|
| T |
4792822 |
ttatctttgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacagttcgaatacgagagagattcaatcggagcaaatctacggtggt |
4792723 |
T |
|
| Q |
213 |
gat |
215 |
Q |
| |
|
||| |
|
|
| T |
4792722 |
gat |
4792720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 8 - 215
Target Start/End: Original strand, 22516895 - 22517102
Alignment:
| Q |
8 |
ccaagaaaatcagaacaaacacatactgtttacattattaaaagtatagtgattgtttctatttatatttcctcatcaactctgttgatgaatgctacaa |
107 |
Q |
| |
|
|||| ||||||||||||| |||||| |||||||||||||||||||||| |||| ||||||||||||||||| ||| ||||| ||| |||||||||||| |
|
|
| T |
22516895 |
ccaaaaaaatcagaacaatcacatattgtttacattattaaaagtataatgatattttctatttatatttccccattaactccgttcctgaatgctacaa |
22516994 |
T |
|
| Q |
108 |
ctagtttacatgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcgaagcaaatccatg |
207 |
Q |
| |
|
| ||||||| ||||||||||||||||||||| ||||||| |||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
22516995 |
caagtttacctgtgtttgaaaaattagaatgtcactttaattcctcgtgtttttggttacaattcaaatacgagagagattcaatcggagcaaatccatg |
22517094 |
T |
|
| Q |
208 |
gtggtgat |
215 |
Q |
| |
|
|||||||| |
|
|
| T |
22517095 |
gtggtgat |
22517102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 96 - 213
Target Start/End: Original strand, 2173445 - 2173562
Alignment:
| Q |
96 |
tgaatgctacaactagtttacatgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcga |
195 |
Q |
| |
|
|||||||||||| |||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
2173445 |
tgaatgctacaattagtttacctctgtttgaaaaattagaatgccactttacttccttgtgtttctggttacaattcaaatacgagagagattcaatcga |
2173544 |
T |
|
| Q |
196 |
agcaaatccatggtggtg |
213 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
2173545 |
agcaaatccatggtggtg |
2173562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 8 - 250
Target Start/End: Original strand, 45309071 - 45309313
Alignment:
| Q |
8 |
ccaagaaaatcagaacaaacacatactgtttacattattaaaagtatagtgattgtttctatttatatttcctcatcaactctgttgatgaatgctacaa |
107 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
45309071 |
ccaaaaaaatcagaacaatcacatactgtttacattattaaaagcataatgatagtttctatttatatttcctcatcaactatgttcctgaatgctacaa |
45309170 |
T |
|
| Q |
108 |
ctagtttacatgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcgaagcaaatccatg |
207 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
45309171 |
ctagtttacccgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcggagcaaatccatg |
45309270 |
T |
|
| Q |
208 |
gtggtgatgaagcagtggcagaaagcttcaagattttggaaca |
250 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
45309271 |
gtggtgatgaagcagtggcataaagcttcaagattttgaaaca |
45309313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 8951980 - 8951740
Alignment:
| Q |
13 |
aaaatcagaacaaacacatactgtttacattattaaaagtatagt---gattgtttctatttatatttcctcatcaactctgttgatgaatgctacaact |
109 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
8951980 |
aaaatcagaacaatcacatactgtttacattattaaaagtataattatgatagtttctatttatatttcctcatcaactatgttcctgaatgctacaact |
8951881 |
T |
|
| Q |
110 |
agtttacatgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcgaagcaaatccatggt |
209 |
Q |
| |
|
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
8951880 |
aatttacctgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcggagcaaatccatggt |
8951781 |
T |
|
| Q |
210 |
ggtgatgaagcagtggcagaaagcttcaagattttggaaca |
250 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
8951780 |
ggtgatgaagcagtggtagaaagcttcaagattttggaaca |
8951740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 8 - 250
Target Start/End: Original strand, 12279742 - 12279984
Alignment:
| Q |
8 |
ccaagaaaatcagaacaaacacatactgtttacattattaaaagtatagtgattgtttctatttatatttcctcatcaactctgttgatgaatgctacaa |
107 |
Q |
| |
|
|||| ||||||||||||| |||||||| |||||||||||||||||||| |||| ||||||||||| ||||||||||||||| |||| |||||||||||| |
|
|
| T |
12279742 |
ccaaaaaaatcagaacaatcacatactatttacattattaaaagtataatgatagtttctatttacatttcctcatcaactttgttcctgaatgctacaa |
12279841 |
T |
|
| Q |
108 |
ctagtttacatgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcgaagcaaatccatg |
207 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| || |
|
|
| T |
12279842 |
ctagtttacctgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcaaatacgagagagattcaatcggagcaaatccgtg |
12279941 |
T |
|
| Q |
208 |
gtggtgatgaagcagtggcagaaagcttcaagattttggaaca |
250 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
12279942 |
gtggtgatgaaggagtggcagaaagcttcaagattttggaaca |
12279984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 13 - 192
Target Start/End: Original strand, 8348509 - 8348688
Alignment:
| Q |
13 |
aaaatcagaacaaacacatactgtttacattattaaaagtatagtgattgtttctatttatatttcctcatcaactctgttgatgaatgctacaactagt |
112 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
8348509 |
aaaatcagaacaatcacatactgtttacataattaaaagtataatgatagtttctatttatatttcctcatcaattctgttcctgaatgctacaactagt |
8348608 |
T |
|
| Q |
113 |
ttacatgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaat |
192 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||| |
|
|
| T |
8348609 |
ttacatatgtttgaaaaattagaatgccactttacttcctcgtgtatctggttacaattcgaatacgtgagagaatcaat |
8348688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 3 - 220
Target Start/End: Original strand, 42074703 - 42074917
Alignment:
| Q |
3 |
gatctccaagaaaatcagaacaaacacatactgtttacattattaaaagtatagtgattgtttctatttatatttcctcatcaactctgttgatgaatgc |
102 |
Q |
| |
|
||||||| | ||||||||||||| | |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
42074703 |
gatctcctaaaaaatcagaacaatcgtatactgtttacattattaaaagtataatgatagtttctatttatatttcctcatcaact---ttcatgaatgc |
42074799 |
T |
|
| Q |
103 |
tacaactagtttacatgtg--tttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcgaagcaa |
200 |
Q |
| |
|
|||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||| |
|
|
| T |
42074800 |
tacaactagtttacctgtgtttttgaaaaatcagaatgccactttacttcctcgtgtttctggtcacaattcgaatac--gagagattcaatcagagcaa |
42074897 |
T |
|
| Q |
201 |
atccatggtggtgatgaagc |
220 |
Q |
| |
|
||||||||||||||| |||| |
|
|
| T |
42074898 |
atccatggtggtgataaagc |
42074917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 205 - 250
Target Start/End: Original strand, 306060 - 306105
Alignment:
| Q |
205 |
atggtggtgatgaagcagtggcagaaagcttcaagattttggaaca |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
306060 |
atggtggtgatgaagcagtggcagaaagcttcaagattttggaaca |
306105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 33167524 - 33167761
Alignment:
| Q |
13 |
aaaatcagaacaaacacatactgtttacattattaaaagtatagtgattgtttctatttatatttcctcatcaactctgttgatgaatgctacaactagt |
112 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||||||||| | || ||||||||||||||||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
33167524 |
aaaatcagaacaatcacatactatttacattattaaaagtataataatagtttctatttatatttcctcatcaactgtgttcctgaatgctacaactagt |
33167623 |
T |
|
| Q |
113 |
ttacatgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcgaagcaaatccatggtggt |
212 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
33167624 |
ttacctgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagatttaatcagagcaaatccatggtggt |
33167723 |
T |
|
| Q |
213 |
gatgaagcagtggcagaaagcttcaagattttggaaca |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33167724 |
gatgaagcagtggcagaaagcttcaagattttggaaca |
33167761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 8 - 250
Target Start/End: Complemental strand, 38829155 - 38828911
Alignment:
| Q |
8 |
ccaagaaaatcagaacaaacacatac--tgtttacattattaaaagtatagtgattgtttctatttatatttcctcatcaactctgttgatgaatgctac |
105 |
Q |
| |
|
|||| ||||||||||||| |||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
38829155 |
ccaaaaaaatcagaacaatcacatatattgtttacattattaaaagtataatgatagtttctatttatatttcctcatcaactttgttcctgaatgctac |
38829056 |
T |
|
| Q |
106 |
aactagtttacatgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcgaagcaaatcca |
205 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
38829055 |
aactagtttacctgtgtttgaaaaattaaaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcggagcaaatcca |
38828956 |
T |
|
| Q |
206 |
tggtggtgatgaagcagtggcagaaagcttcaagattttggaaca |
250 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
38828955 |
tggtggtggtgaagcagtcgcagaaagcttcaagattttggaaca |
38828911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 8 - 250
Target Start/End: Original strand, 8143831 - 8144073
Alignment:
| Q |
8 |
ccaagaaaatcagaacaaacacatactgtttacattattaaaagtatagtgattgtttctatttatatttcctcatcaactctgttgatgaatgctacaa |
107 |
Q |
| |
|
|||| ||||||||||||| |||||| |||||||||||||||||||||| |||| ||||||||||||||||||| |||||||||||| |||||||||||| |
|
|
| T |
8143831 |
ccaaaaaaatcagaacaatcacataatgtttacattattaaaagtataatgatagtttctatttatatttcctgatcaactctgttcctgaatgctacaa |
8143930 |
T |
|
| Q |
108 |
ctagtttacatgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcgaagcaaatccatg |
207 |
Q |
| |
|
|||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||||||| |
|
|
| T |
8143931 |
gtagtttacctgtttttggaaaattagaatgccactttacttcctcgtgtttctggttacaatttgaatacgagagagattcaattggagcaaatccatg |
8144030 |
T |
|
| Q |
208 |
gtggtgatgaagcagtggcagaaagcttcaagattttggaaca |
250 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
8144031 |
gtggtgatgaagcagtagcagaaagcttcaagattttggaaca |
8144073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 53061010 - 53060775
Alignment:
| Q |
13 |
aaaatcagaacaaacacatactgtttacattattaaaagtatagtgattgtttctatttatatttcctcatcaactctgttgatgaatgctacaactagt |
112 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| | || ||||||||||||||||| |
|
|
| T |
53061010 |
aaaatcagaacaatcacatactgtttacattattaaaagtataatgatagtttctatttatatttcctcatcaactgtattcctgaatgctacaactagt |
53060911 |
T |
|
| Q |
113 |
ttacatgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcgaagcaaatccatggtggt |
212 |
Q |
| |
|
|||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||| ||||| |||| ||||||||||||||||| |
|
|
| T |
53060910 |
ttac--gtgtttgaaaaattacaatgtcactttacttcctcgtgtttctggttacaatttgaatacgagagtgattcgatcggagcaaatccatggtggt |
53060813 |
T |
|
| Q |
213 |
gatgaagcagtggcagaaagcttcaagattttggaaca |
250 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
53060812 |
gatgaagtagtggtagaaagcttcaagattttggaaca |
53060775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 13 - 220
Target Start/End: Original strand, 6033335 - 6033542
Alignment:
| Q |
13 |
aaaatcagaacaaacacatactgtttacattattaaaagtatagtgattgtttctatttatatttcctcatcaactctgttgatgaatgctacaactagt |
112 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
6033335 |
aaaatcagaacaatcacatactatttacattattaaaagtataatgatagtttctatttatatttcctcatcaactttgttcatgaatgctacaactagt |
6033434 |
T |
|
| Q |
113 |
ttacatgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcgaagcaaatccatggtggt |
212 |
Q |
| |
|
|||||||||||||||| |||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
6033435 |
ttacatgtgtttgaaacattaaaatgtcactttacttcctcctgtttctggttacaattcgaatacgagagagattcaatcggagcaaatccatggtggt |
6033534 |
T |
|
| Q |
213 |
gatgaagc |
220 |
Q |
| |
|
||| |||| |
|
|
| T |
6033535 |
gataaagc |
6033542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 1139725 - 1139504
Alignment:
| Q |
13 |
aaaatcagaacaaacacatactgtttacattattaaaagtatagtgattgtttctatttatatttcctcatcaactctgttgatgaatgctacaactagt |
112 |
Q |
| |
|
||||||||| ||| |||||| |||||||||||||||||||||| |||| ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
1139725 |
aaaatcagaccaatcacataatgtttacattattaaaagtataatgatagtttctatttatatttcct----------------gaatgctacaactagt |
1139642 |
T |
|
| Q |
113 |
ttacatgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcgaagcaaatccatggtggt |
212 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1139641 |
ttacccgtgtttgaaaaattagaatgccactttacttcctcatgtttctggttacaattcaaatacgagagagattcaatcgaagcaaatccatggtggt |
1139542 |
T |
|
| Q |
213 |
gatgaagcagtggcagaaagcttcaagattttggaaca |
250 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
1139541 |
gatgaagcagtggcagaaaacttcaagattttggaaca |
1139504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 19 - 210
Target Start/End: Complemental strand, 51543563 - 51543374
Alignment:
| Q |
19 |
agaacaaacacatactgtttacattattaaaagtatagtgattgtttctatttatatttcctcatcaactctgttgatgaatgctacaactagtttacat |
118 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |
|
|
| T |
51543563 |
agaacaatcacatactgtttacattattaaaagtataatgatagtttctatttatatttcctcatcaactctgttcttgaatgctacaactagtttacct |
51543464 |
T |
|
| Q |
119 |
gtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcgaagcaaatccatggtg |
210 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
51543463 |
ttgtttgaaaaattagaatgcccctttacttcctcgtgtttttggttacaattcgaatacga--gagattcaatcggagcaaatccatggtg |
51543374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 13 - 220
Target Start/End: Complemental strand, 29775949 - 29775742
Alignment:
| Q |
13 |
aaaatcagaacaaacacatactgtttacattattaaaagtatagtgattgtttctatttatatttcctcatcaactctgttgatgaatgctacaactagt |
112 |
Q |
| |
|
||||||||||||| |||||||||||| |||||||||||||||| |||| |||| |||||||||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
29775949 |
aaaatcagaacaatcacatactgtttgcattattaaaagtataatgatagtttatatttatatttcctcatcaactctattcctgaatgctacaactagt |
29775850 |
T |
|
| Q |
113 |
ttacatgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcgaagcaaatccatggtggt |
212 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||| | |||||| | |||||| |
|
|
| T |
29775849 |
ttacccgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggtaacaattcaaaaacgagagagattcaatcagaacaaatctacggtggt |
29775750 |
T |
|
| Q |
213 |
gatgaagc |
220 |
Q |
| |
|
||| |||| |
|
|
| T |
29775749 |
gataaagc |
29775742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 168 - 250
Target Start/End: Original strand, 44271546 - 44271628
Alignment:
| Q |
168 |
aattcgaatacgagagagattcaatcgaagcaaatccatggtggtgatgaagcagtggcagaaagcttcaagattttggaaca |
250 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
44271546 |
aattcgaacacgagagagattcaatcggagcaaatccatggcggtgatgaagcagtagcagaaagcttcaagattttggaaca |
44271628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 202 - 236
Target Start/End: Original strand, 31761430 - 31761464
Alignment:
| Q |
202 |
tccatggtggtgatgaagcagtggcagaaagcttc |
236 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
31761430 |
tccatggtggtgatgaagcagtggcagaaagcttc |
31761464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 8 - 250
Target Start/End: Original strand, 24279018 - 24279260
Alignment:
| Q |
8 |
ccaagaaaatcagaacaaacacatactgtttacattattaaaagtatagtgattgtttctatttatatttcctcatcaactctgttgatgaatgctacaa |
107 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
24279018 |
ccaaaaaaatcagaacaatcacatactgtttacattattaaaagtataatgatagtttatatttatatttcctcatcaactctgttcctgaatgatacaa |
24279117 |
T |
|
| Q |
108 |
ctagtttacatgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcgaagcaaatccatg |
207 |
Q |
| |
|
||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||||| |
|
|
| T |
24279118 |
ctagtttacctgtgtttgaaaaattagaatgtcactttacttccttgtgtttctggttacaattcgaatacgagagggattcaatcggagcaaatccatg |
24279217 |
T |
|
| Q |
208 |
gtggtgatgaagcagtggcagaaagcttcaagattttggaaca |
250 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
24279218 |
gtggtgatgaaccagtggcagaaagcttcaagattttggaaca |
24279260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 8 - 250
Target Start/End: Original strand, 42437422 - 42437665
Alignment:
| Q |
8 |
ccaagaaaatcagaacaaacacatactgtttacattattaaaagtatagtgattgtttctatttatatttcctcatcaactctgttgatgaatgctacaa |
107 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
42437422 |
ccaaaaaaatcagaacaatgacatactgtttacattattaaaagtataatgatagtttctatttatatttcctcatcaactatgttcctgaatgctacaa |
42437521 |
T |
|
| Q |
108 |
ctagtttacatgtgtttgaaaaattagaa-tgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcgaagcaaatccat |
206 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
42437522 |
ctagtttacctgtgtttgaaaaattagaaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagaggttcaatcggtgcaaatccat |
42437621 |
T |
|
| Q |
207 |
ggtggtgatgaagcagtggcagaaagcttcaagattttggaaca |
250 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
42437622 |
ggtggtgatgaagcactggcagaaagcttcaagattttggaaca |
42437665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 8 - 220
Target Start/End: Complemental strand, 30504299 - 30504087
Alignment:
| Q |
8 |
ccaagaaaatcagaacaaacacatactgtttacattattaaaagtatagtgattgtttctatttatatttcctcatcaactctgttgatgaatgctacaa |
107 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
30504299 |
ccaaaaaaatcagaacaatcacatactgtttacattattaaaagtataatgatagtttctatttatatttcctcatcaactctgttcctgaatgctacaa |
30504200 |
T |
|
| Q |
108 |
ctagtttacatgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcgaagcaaatccatg |
207 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
30504199 |
ctagtttactattgtttgaaaaattagaatgccactttacttccttgtgtttctggttacaattcgaatacgagagagattcaatcggagcaaatccatg |
30504100 |
T |
|
| Q |
208 |
gtggtgatgaagc |
220 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
30504099 |
gtggtgataaagc |
30504087 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0854 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: scaffold0854
Description:
Target: scaffold0854; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 8 - 250
Target Start/End: Original strand, 2790 - 3012
Alignment:
| Q |
8 |
ccaagaaaatcagaacaaacacatactgtttacattattaaaagtatagtgattgtttctatttatatttcctcatcaactctgttgatgaatgctacaa |
107 |
Q |
| |
|
|||| ||||||||||||| |||||| |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||| ||| |
|
|
| T |
2790 |
ccaaaaaaatcagaacaatcacatattgtttacattattaaaagtataatgatagtttctatttatatttcctcatcaactctgttcctgaatgctgcaa |
2889 |
T |
|
| Q |
108 |
ctagtttacatgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcgaagcaaatccatg |
207 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
2890 |
--------------------aaattagaatgtcactttacttcctcgtctttctagttacaattcgaatacgagagagattcaatcggagcaaatccatg |
2969 |
T |
|
| Q |
208 |
gtggtgatgaagcagtggcagaaagcttcaagattttggaaca |
250 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
2970 |
gtggtgatgaagcagtggcagaaaacttcaagtttttggaaca |
3012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0286 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: scaffold0286
Description:
Target: scaffold0286; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 96 - 213
Target Start/End: Complemental strand, 20596 - 20478
Alignment:
| Q |
96 |
tgaatgctacaactagtttacatgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaa-tcg |
194 |
Q |
| |
|
|||||||||||| |||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| | | |
|
|
| T |
20596 |
tgaatgctacaattagtttacctctgtttgaaaaattagaatgccactttacttccttgtgtttctggttacaattcaaatacgagagagattcaagtgg |
20497 |
T |
|
| Q |
195 |
aagcaaatccatggtggtg |
213 |
Q |
| |
|
| || |||||||||||||| |
|
|
| T |
20496 |
acgcgaatccatggtggtg |
20478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 7 - 77
Target Start/End: Original strand, 200897 - 200967
Alignment:
| Q |
7 |
tccaagaaaatcagaacaaacacatactgtttacattattaaaagtatagtgattgtttctatttatattt |
77 |
Q |
| |
|
||||| || |||||||||| |||||||| ||||||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
200897 |
tccaaaaatatcagaacaatcacatactatttacattattaaaagtatagtgatagtttctatttctattt |
200967 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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