View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18901_high_25 (Length: 245)
Name: NF18901_high_25
Description: NF18901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18901_high_25 |
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Alignment Details
Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 153 - 231
Target Start/End: Complemental strand, 32539460 - 32539389
Alignment:
| Q |
153 |
gaagtaaattaaatacccaagtttgtaatattatatgatgaaaaagaaatgcttatatatgttagggacatgtgaaggg |
231 |
Q |
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| T |
32539460 |
gaagtaaattaaatacccaagtttgtaa---tatatgatgaaaaagaaatgct----tatgttagggacatgtgaaggg |
32539389 |
T |
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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 73 - 119
Target Start/End: Complemental strand, 32539503 - 32539457
Alignment:
| Q |
73 |
aaattggttttatgagaagttaagacaataattagggaatagcgaag |
119 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
32539503 |
aaattggttttatgtgaagttaagacaataattagggaatagcgaag |
32539457 |
T |
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