View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18901_high_33 (Length: 224)

Name: NF18901_high_33
Description: NF18901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18901_high_33
NF18901_high_33
[»] chr3 (6 HSPs)
chr3 (1-212)||(26404659-26404870)
chr3 (1-33)||(26404871-26404903)
chr3 (1-33)||(26404974-26405006)
chr3 (102-134)||(30173620-30173652)
chr3 (102-134)||(30430326-30430358)
chr3 (102-134)||(41993144-41993176)
[»] chr8 (3 HSPs)
chr8 (102-141)||(9861617-9861656)
chr8 (102-141)||(15229665-15229704)
chr8 (102-141)||(31212362-31212401)
[»] chr5 (1 HSPs)
chr5 (101-134)||(20510462-20510495)
[»] chr7 (1 HSPs)
chr7 (102-138)||(31172227-31172263)
[»] chr6 (1 HSPs)
chr6 (102-134)||(31298892-31298924)
[»] chr2 (1 HSPs)
chr2 (102-134)||(981085-981117)


Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 26404870 - 26404659
Alignment:
Q  1 atgattcacatcatttagtataaaattaggatatacttctaaacatttcaacataatttggtccaaactatctaaccttgattggggttttcggaaacta 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26404870 atgattcacatcattttgtataaaattaggatatacttctaaacatttcaacataatttggtccaaactatctaaccttgattggggttttcggaaacta 26404771  T
Q  101 gtttagagggatcaaaagcctaaagaatattttatagggaccgatgttttgttcttcaaccattttgtttcttcttaagttccctcagcctatttacctc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  26404770 gtttagagggatcaaaagcctaaagaatattttatagggaccgatggtttgttcttcaaccattttgtttcttcctaagttccctcagcctatttacctc 26404671  T
Q  201 agctatcatatt 212  Q
    ||||||||||||    
T  26404670 agctatcatatt 26404659  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 26404903 - 26404871
Alignment:
Q  1 atgattcacatcatttagtataaaattaggata 33  Q
    |||||||||||||||||||||||||||||||||    
T  26404903 atgattcacatcatttagtataaaattaggata 26404871  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 26405006 - 26404974
Alignment:
Q  1 atgattcacatcatttagtataaaattaggata 33  Q
    |||||||||||| ||||||||||||||||||||    
T  26405006 atgattcacatcgtttagtataaaattaggata 26404974  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 134
Target Start/End: Original strand, 30173620 - 30173652
Alignment:
Q  102 tttagagggatcaaaagcctaaagaatatttta 134  Q
    |||||||||||||||||||||||||| ||||||    
T  30173620 tttagagggatcaaaagcctaaagaaaatttta 30173652  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 134
Target Start/End: Complemental strand, 30430358 - 30430326
Alignment:
Q  102 tttagagggatcaaaagcctaaagaatatttta 134  Q
    |||||||||| ||||||||||||||||||||||    
T  30430358 tttagagggaccaaaagcctaaagaatatttta 30430326  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 134
Target Start/End: Original strand, 41993144 - 41993176
Alignment:
Q  102 tttagagggatcaaaagcctaaagaatatttta 134  Q
    ||||||||||||||||||||||| |||||||||    
T  41993144 tttagagggatcaaaagcctaaaaaatatttta 41993176  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 141
Target Start/End: Complemental strand, 9861656 - 9861617
Alignment:
Q  102 tttagagggatcaaaagcctaaagaatattttatagggac 141  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  9861656 tttagagggaccaaaagcctaaagaatattttatagggac 9861617  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 141
Target Start/End: Complemental strand, 15229704 - 15229665
Alignment:
Q  102 tttagagggatcaaaagcctaaagaatattttatagggac 141  Q
    ||||||||||||||||| | ||||||||||||||||||||    
T  15229704 tttagagggatcaaaagtcaaaagaatattttatagggac 15229665  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 141
Target Start/End: Complemental strand, 31212401 - 31212362
Alignment:
Q  102 tttagagggatcaaaagcctaaagaatattttatagggac 141  Q
    |||||||||| ||||||||||||||||||||||| |||||    
T  31212401 tttagagggaccaaaagcctaaagaatattttatggggac 31212362  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 134
Target Start/End: Original strand, 20510462 - 20510495
Alignment:
Q  101 gtttagagggatcaaaagcctaaagaatatttta 134  Q
    |||||||||||||||||||||||| |||||||||    
T  20510462 gtttagagggatcaaaagcctaaaaaatatttta 20510495  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 31172263 - 31172227
Alignment:
Q  102 tttagagggatcaaaagcctaaagaatattttatagg 138  Q
    ||||||||||||||||| ||||| |||||||||||||    
T  31172263 tttagagggatcaaaagtctaaaaaatattttatagg 31172227  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 134
Target Start/End: Original strand, 31298892 - 31298924
Alignment:
Q  102 tttagagggatcaaaagcctaaagaatatttta 134  Q
    |||||||||| ||||||||||||||||||||||    
T  31298892 tttagagggagcaaaagcctaaagaatatttta 31298924  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 134
Target Start/End: Original strand, 981085 - 981117
Alignment:
Q  102 tttagagggatcaaaagcctaaagaatatttta 134  Q
    |||||||||| ||||||||||||||||||||||    
T  981085 tttagagggaccaaaagcctaaagaatatttta 981117  T

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