View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18901_high_36 (Length: 213)
Name: NF18901_high_36
Description: NF18901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18901_high_36 |
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Alignment Details
Target: chr6 (Bit Score: 118; Significance: 2e-60; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 6 - 198
Target Start/End: Complemental strand, 34243653 - 34243464
Alignment:
| Q |
6 |
ggacatcatcattgaacaccttaattatatagcactgatgggcgattttgggtgaattcgtttgctcgaagaannnnnnnnnnnnnnnnnntgcacgtgg |
105 |
Q |
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| T |
34243653 |
ggacaacatcattgaacaccttaattatatagcactgatgggcgattttgggtgaattcgtttgctcgaagaagaggaggaggagagg---tgcacgtgg |
34243557 |
T |
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| Q |
106 |
tattttaatggtgcatttaaatctcagccattaacttttaatcaaatggtcgataattattctcatgtacgtatgtgtatgtaggatttttct |
198 |
Q |
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| T |
34243556 |
tattttaatggagcatttaaatctcagccattaacttttaatcaaatggttgatagttattctcatgtacgtatgtgtatgtaggatttttct |
34243464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 171
Target Start/End: Complemental strand, 11434659 - 11434596
Alignment:
| Q |
108 |
ttttaatggtgcatttaaatctcagccattaacttttaatcaaatggtcgataattattctcat |
171 |
Q |
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| T |
11434659 |
ttttaattgagcatttaaatctcaaccattagcttttaatcaaatagttgatgattattctcat |
11434596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 166
Target Start/End: Original strand, 11436425 - 11436473
Alignment:
| Q |
118 |
gcatttaaatctcagccattaacttttaatcaaatggtcgataattatt |
166 |
Q |
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| T |
11436425 |
gcatttaaatctcaaccgttagcttttaatcaaatggttgataattatt |
11436473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 97 - 170
Target Start/End: Original strand, 4180993 - 4181066
Alignment:
| Q |
97 |
tgcacgtggtattttaatggtgcatttaaatctcagccattaacttttaatcaaatggtcgataattattctca |
170 |
Q |
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| T |
4180993 |
tgcatgtggtatattaagtgagcatttaaatctcagccataaacttttaatcaaatggttgataattattctca |
4181066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 102 - 162
Target Start/End: Original strand, 24252293 - 24252353
Alignment:
| Q |
102 |
gtggtattttaatggtgcatttaaatctcagccattaacttttaatcaaatggtcgataat |
162 |
Q |
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| T |
24252293 |
gtggtattttaattgaccatttaaatctcagccattaacttttaatcaaatggttgataat |
24252353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 108 - 170
Target Start/End: Original strand, 39738811 - 39738873
Alignment:
| Q |
108 |
ttttaatggtgcatttaaatctcagccattaacttttaatcaaatggtcgataattattctca |
170 |
Q |
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| T |
39738811 |
ttttaattgagcatttaaatctcaaccattagcttttaattaaatggttgatgattattctca |
39738873 |
T |
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