View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18901_high_7 (Length: 450)
Name: NF18901_high_7
Description: NF18901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18901_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 1 - 438
Target Start/End: Complemental strand, 40103126 - 40102689
Alignment:
| Q |
1 |
aatcaaaacagtttcttgcattttgtttgaagaaactagaacagaatatgaaattcaagagagttaggttagtacatgctgaaacccttccaactgaacc |
100 |
Q |
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| T |
40103126 |
aatcaaaacagtttcttgcattttgtttgaagaaactagaacagaatatgaaattcaagagagttaggttagtacatgctgaaacccttccatctgaacc |
40103027 |
T |
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| Q |
101 |
ccactcgaaaattatcaaaatcaaggtttttgttcagaaagaggttatgaatggaacaatattggaacagtcttatgttgttgagtatgttcaatataat |
200 |
Q |
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| T |
40103026 |
cgactcgaaaattatcaaaatcaaggtttttgttcagaaagaggttataaatggaacaatattggaacagtcttatgttgttgagtatgttcaatataat |
40102927 |
T |
|
| Q |
201 |
cgtatttgtgaagattgtgctcgggtgaatgctaaccctaatcaatggagtgctgttgtgcagttaagacaacatgtttcgcatatgcgcagtatatttg |
300 |
Q |
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| T |
40102926 |
cgtatttgtgaagattgtactcgggtgaatgcgaacgctaatcaatggagtgctgttgtgcagttaagacaacatgtttcgcatatgcgcagtatatttg |
40102827 |
T |
|
| Q |
301 |
atttggaacaggctattttgaaacacggtgttggtaggaatgttgtgagaatcaaaaagatgaaacaaggtattgacnnnnnnnncgatagagaaagttg |
400 |
Q |
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| T |
40102826 |
atttggaacaggctattttgaaacatggtgttggtaggaatgttgtgagaatcaaaaagatgaaacaaggtattgacttttttttcgatagagaaagttg |
40102727 |
T |
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| Q |
401 |
tgctaagaagtttgttgattttgtaaaggcacaggttc |
438 |
Q |
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| T |
40102726 |
tgctaagaagtttgttgattttgtaaaggcacaggttc |
40102689 |
T |
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