View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18901_high_8 (Length: 419)
Name: NF18901_high_8
Description: NF18901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18901_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 19 - 401
Target Start/End: Complemental strand, 5620504 - 5620132
Alignment:
| Q |
19 |
tgtaatcctaatgtttcacttaaatgatgaattgagctcattacagaaatttgtcaagagaatatacttcatcaaccaataatacttctttagaattata |
118 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5620504 |
tgtaattctaatgtttcacttaaatgatgaattgagctcattacagaaatttgtcaagagaatatacttcatcaaccaataatacttctttagaattata |
5620405 |
T |
|
| Q |
119 |
caagtctccctctattttaatctaacacgaaccttccttatttttaactataacaaaatgtacaggtccccaatatatgataaaagttaacagttaggaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5620404 |
caagtctccctctattttaatctaacacgaaccttccttatttttaactataacaaaatgtacaggtccccaatatatgataaaagttaacagttaggaa |
5620305 |
T |
|
| Q |
219 |
aatgtgtgacattgaaaacaagaatgggaaatctaaaaacttatgaaatcacaccggagaacttttaatttatacttgtttctttcaaagtaaagaagca |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |||||||||| |
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| T |
5620304 |
aatgtgtgacattgaaaacaagaatgggaaatctaaaaacctatgaaatcacaccggagaacttttaatttatacttatt----------taaagaagca |
5620215 |
T |
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| Q |
319 |
ataaatttaagaatttaaagagtgctctagtgaacaagactcccatcgtagtgggtccgggtagggtctgatctgtcaacctt |
401 |
Q |
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| T |
5620214 |
ataaatttaagaatttaaagggtgctctagtgaacaagactcccatcgtagtgggtccgggtagggtctgatctgtcaacctt |
5620132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 230
Target Start/End: Original strand, 21425026 - 21425238
Alignment:
| Q |
19 |
tgtaatcctaatgtttcacttaaatgatgaattgagctcattacagaaatttgtcaagagaatatacttcatcaaccaataatacttctttagaattata |
118 |
Q |
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|||||||||||||| ||| ||| | || |||| || |||||||| ||| ||||||||||||||||||||| ||||| | ||||||| ||| |||| |
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| T |
21425026 |
tgtaatcctaatgtatcatttatgt-atcaattaagatcattacaaaaacttgtcaagagaatatacttca---accaaaactacttctagtgaactata |
21425121 |
T |
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| Q |
119 |
caagtctccctctatttt---aatctaacacgaaccttccttatttttaactataacaaaatgtacaggtccccaatat---atgataaaagttaacagt |
212 |
Q |
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| ||||| ||||||| | ||||| |||||||||||||||| |||||||| || |||| | |||| | ||| |||| ||||||||||||| || | |
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| T |
21425122 |
ccggtctctctctattatcacaatcttacacgaaccttcctta-ttttaacttcaataaaacggacagcttccctatatgccatgataaaagttagcaat |
21425220 |
T |
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| Q |
213 |
taggaaaatgtgtgacat |
230 |
Q |
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|||||||||| |||||| |
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| T |
21425221 |
aaggaaaatgtatgacat |
21425238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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