View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18901_low_11 (Length: 385)

Name: NF18901_low_11
Description: NF18901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18901_low_11
NF18901_low_11
[»] chr3 (9 HSPs)
chr3 (164-279)||(6787212-6787325)
chr3 (258-357)||(6943404-6943503)
chr3 (258-357)||(6940208-6940306)
chr3 (249-339)||(6234011-6234101)
chr3 (315-370)||(6787326-6787381)
chr3 (275-339)||(6138905-6138969)
chr3 (266-341)||(6164220-6164295)
chr3 (295-339)||(6859391-6859435)
chr3 (249-339)||(13283103-13283193)
[»] chr1 (2 HSPs)
chr1 (7-136)||(16465686-16465822)
chr1 (40-90)||(50248297-50248347)
[»] chr5 (1 HSPs)
chr5 (31-136)||(1265276-1265388)
[»] chr7 (2 HSPs)
chr7 (7-69)||(5458577-5458639)
chr7 (7-131)||(10583161-10583292)
[»] chr6 (2 HSPs)
chr6 (91-136)||(9646155-9646200)
chr6 (91-136)||(9652172-9652217)


Alignment Details
Target: chr3 (Bit Score: 85; Significance: 2e-40; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 164 - 279
Target Start/End: Original strand, 6787212 - 6787325
Alignment:
Q  164 gacacactttcatttcttgatttatggtgaaaaatagactgcctgccactctacaaaagtcctctgacccatgtgtggactgtgttctcttcagattggt 263  Q
    ||||||||||||||| ||||| ||||||||| ||||||||||||||||||| ||||||||||||| |||||  |||||||||||||||||||||||||||    
T  6787212 gacacactttcatttgttgatgtatggtgaataatagactgcctgccactcgacaaaagtcctcttaccca--tgtggactgtgttctcttcagattggt 6787309  T
Q  264 agatgctgattctgct 279  Q
    ||||||||||||||||    
T  6787310 agatgctgattctgct 6787325  T

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Target: chr3; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 258 - 357
Target Start/End: Complemental strand, 6943503 - 6943404
Alignment:
Q  258 attggtagatgctgattctgctggtgagacactcccaaccaattcatcatcagtggcaaggagagattgcagctgaagaacaaagtaactgcaagagctt 357  Q
    |||||||||||||||||||||||||||||| ||| |||||| ||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||    
T  6943503 attggtagatgctgattctgctggtgagaccctctcaaccatttcatcatcagtgtcaaggagagattgcatctcaagaacaaagtaactgcaagagctt 6943404  T

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Target: chr3; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 258 - 357
Target Start/End: Complemental strand, 6940306 - 6940208
Alignment:
Q  258 attggtagatgctgattctgctggtgagacactcccaaccaattcatcatcagtggcaaggagagattgcagctgaagaacaaagtaactgcaagagctt 357  Q
    ||||||||||||| |||||||||||||||  ||| ||||||  |||||||||||| ||||||||||||||| ||||||||| ||||||||| ||||||||    
T  6940306 attggtagatgctcattctgctggtgagatcctctcaaccatctcatcatcagtgtcaaggagagattgcatctgaagaac-aagtaactgaaagagctt 6940208  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 249 - 339
Target Start/End: Complemental strand, 6234101 - 6234011
Alignment:
Q  249 tctcttcagattggtagatgctgattctgctggtgagacactcccaaccaattcatcatcagtggcaaggagagattgcagctgaagaaca 339  Q
    ||||| ||||||| || |||||| | ||||||||||||  |||||| ||| ||||||||||| ||| |||||||| |||||||||||||||    
T  6234101 tctctgcagattgataaatgctggtcctgctggtgagattctcccagccatttcatcatcagcggcgaggagagaatgcagctgaagaaca 6234011  T

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Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 315 - 370
Target Start/End: Original strand, 6787326 - 6787381
Alignment:
Q  315 aaggagagattgcagctgaagaacaaagtaactgcaagagcttgtcttgacttaac 370  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||| || ||||||    
T  6787326 aaggatagattgcagctgaagaacaaagtaactgcaagagcatgtcctgtcttaac 6787381  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 275 - 339
Target Start/End: Complemental strand, 6138969 - 6138905
Alignment:
Q  275 ctgctggtgagacactcccaaccaattcatcatcagtggcaaggagagattgcagctgaagaaca 339  Q
    ||||||||||||  |||||| ||| ||||||||||||||  |||||||| |||||||||||||||    
T  6138969 ctgctggtgagattctcccagccatttcatcatcagtggtgaggagagaatgcagctgaagaaca 6138905  T

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Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 266 - 341
Target Start/End: Complemental strand, 6164295 - 6164220
Alignment:
Q  266 atgctgattctgctggtgagacactcccaaccaattcatcatcagtggcaaggagagattgcagctgaagaacaaa 341  Q
    |||||| | ||||||||||||  |||||| ||  |||||| |||||||| |||||||| |||||||||||||||||    
T  6164295 atgctggtcctgctggtgagattctcccagccgtttcatcgtcagtggcgaggagagaatgcagctgaagaacaaa 6164220  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 295 - 339
Target Start/End: Original strand, 6859391 - 6859435
Alignment:
Q  295 accaattcatcatcagtggcaaggagagattgcagctgaagaaca 339  Q
    |||| |||||||||||| ||||||||||| |||||||||||||||    
T  6859391 accatttcatcatcagtagcaaggagagaatgcagctgaagaaca 6859435  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 339
Target Start/End: Original strand, 13283103 - 13283193
Alignment:
Q  249 tctcttcagattggtagatgctgattctgctggtgagacactcccaaccaattcatcatcagtggcaaggagagattgcagctgaagaaca 339  Q
    ||||| ||||||| || |||||| | ||||||||||||  |||||| ||  |||||||||||| |  | |||||| |||||||||||||||    
T  13283103 tctctgcagattgataaatgctggtcctgctggtgagattctcccagccgtttcatcatcagtagagatgagagaatgcagctgaagaaca 13283193  T

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Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 7 - 136
Target Start/End: Original strand, 16465686 - 16465822
Alignment:
Q  7 gttttctcattgcctttgggattgctctttgtttttgctagcttaggttatgtttggatagttggcctgctatggctactactt-------tttcttttg 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||| ||| ||||| ||||||       |||||||||    
T  16465686 gttttctcattgcctttgggattgctctttgtttttgctagcttaggttctgttttgatagctggccagctgtggctgctacttgtctctctttcttttg 16465785  T
Q  100 tttaatttctgcactctggctgtataagggttcaagc 136  Q
    | |  ||||||||||||||||||||||||||||||||    
T  16465786 tgttttttctgcactctggctgtataagggttcaagc 16465822  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 90
Target Start/End: Complemental strand, 50248347 - 50248297
Alignment:
Q  40 tttgctagcttaggttatgtttggatagttggcctgctatggctactactt 90  Q
    |||||||||||||||| ||||| ||||||| ||||| | ||||||||||||    
T  50248347 tttgctagcttaggttctgttttgatagtttgcctgttgtggctactactt 50248297  T

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Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 31 - 136
Target Start/End: Complemental strand, 1265388 - 1265276
Alignment:
Q  31 ctctttgtttttgctagcttaggttatgtttggatagttggcctgctatggctactactt-------tttcttttgtttaatttctgcactctggctgta 123  Q
    |||||||||||||||||||||||||   ||| ||||||||||||| | ||||||||||||       |||||||||| || ||| |||||||||||||||    
T  1265388 ctctttgtttttgctagcttaggttcaatttagatagttggcctgatgtggctactacttgtctctctttcttttgtgtagtttttgcactctggctgta 1265289  T
Q  124 taagggttcaagc 136  Q
    |||||||||||||    
T  1265288 taagggttcaagc 1265276  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 7 - 69
Target Start/End: Complemental strand, 5458639 - 5458577
Alignment:
Q  7 gttttctcattgcctttgggattgctctttgtttttgctagcttaggttatgtttggatagtt 69  Q
    ||||||||||||||| |||||||| |||||||||||||||| ||||||| | ||| |||||||    
T  5458639 gttttctcattgcctatgggattgttctttgtttttgctagtttaggttctattttgatagtt 5458577  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 7 - 131
Target Start/End: Original strand, 10583161 - 10583292
Alignment:
Q  7 gttttctcattgcctttgggattgctctttgtttttgctagcttaggttatgtttggatagttggcctgctatggctacta-------ctttttcttttg 99  Q
    |||||||| |||| |||||||  |||||||||||||| |||||||| || ||||| ||||  ||||||| | ||||| |||       || ||||| |||    
T  10583161 gttttctctttgcatttgggaccgctctttgtttttggtagcttagtttctgttttgataactggcctgttgtggctgctatttgtctctctttctcttg 10583260  T
Q  100 tttaatttctgcactctggctgtataagggtt 131  Q
    | | |||||||||||||||||||| |||||||    
T  10583261 tgtcatttctgcactctggctgtacaagggtt 10583292  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 91 - 136
Target Start/End: Complemental strand, 9646200 - 9646155
Alignment:
Q  91 tttcttttgtttaatttctgcactctggctgtataagggttcaagc 136  Q
    |||||||||| |||||| |||||| |||||||||||||||||||||    
T  9646200 tttcttttgtgtaatttttgcactttggctgtataagggttcaagc 9646155  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 91 - 136
Target Start/End: Complemental strand, 9652217 - 9652172
Alignment:
Q  91 tttcttttgtttaatttctgcactctggctgtataagggttcaagc 136  Q
    |||||||||| |||||| |||||| |||||||||||||||||||||    
T  9652217 tttcttttgtgtaatttttgcactttggctgtataagggttcaagc 9652172  T

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