View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18901_low_15 (Length: 295)
Name: NF18901_low_15
Description: NF18901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18901_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 2 - 284
Target Start/End: Complemental strand, 1484463 - 1484181
Alignment:
| Q |
2 |
agattattcttacatctccatcaatttttactcatggctgaatcaagcaaacttcatgcaacccacgatccttaagttagatggtcactatcatcattgg |
101 |
Q |
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| T |
1484463 |
agattattcttacatctccatcaatttttactcatggctgaatcaagcaaacttcatgccacccacgatccttaagttcgatggtcactatgatcattgg |
1484364 |
T |
|
| Q |
102 |
acaatgaaaatggagaattcacttcaatccaaagacgaaaaattatctttttgcaagcaattgataatattatcttggattcttgtttgagataaaggaa |
201 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1484363 |
acaataaaaatggagaattcacttcaatccaaagacgaaaaattatctttttgcaagcaattgataatattatcttggattcttgtttgagataaaggaa |
1484264 |
T |
|
| Q |
202 |
attgggactccgtaattgcactgaactgctcctgctggaggcaagcaaggatgagagaaaggtagtttttggtgaaaaatgat |
284 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1484263 |
attgggactccgtaattgcactgaactgctcctactggaggcaagcaaggatgagagaaaggtagtttttggtgaaaaatgat |
1484181 |
T |
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