View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18901_low_3 (Length: 506)

Name: NF18901_low_3
Description: NF18901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18901_low_3
NF18901_low_3
[»] chr6 (12 HSPs)
chr6 (160-488)||(18290977-18291306)
chr6 (96-145)||(2173750-2173799)
chr6 (96-145)||(4792465-4792514)
chr6 (96-145)||(29873233-29873282)
chr6 (96-145)||(2017306-2017355)
chr6 (96-145)||(22516135-22516184)
chr6 (99-139)||(4793650-4793690)
chr6 (96-145)||(11623353-11623402)
chr6 (96-145)||(11624179-11624228)
chr6 (96-138)||(22517304-22517346)
chr6 (96-145)||(2018328-2018377)
chr6 (96-145)||(29874334-29874383)
[»] scaffold0005 (1 HSPs)
scaffold0005 (96-145)||(22984-23033)
[»] chr7 (7 HSPs)
chr7 (96-145)||(30503841-30503890)
chr7 (96-145)||(24278263-24278312)
chr7 (96-145)||(26974424-26974473)
chr7 (96-145)||(30505012-30505061)
chr7 (96-145)||(42437847-42437896)
chr7 (96-140)||(24279435-24279479)
chr7 (96-145)||(42437022-42437071)
[»] chr5 (11 HSPs)
chr5 (96-145)||(38974757-38974806)
chr5 (96-145)||(22471768-22471817)
chr5 (96-145)||(26364739-26364788)
chr5 (96-145)||(38163546-38163595)
chr5 (96-145)||(38973520-38973569)
chr5 (96-136)||(41083160-41083200)
chr5 (96-135)||(38973620-38973659)
chr5 (96-145)||(4887585-4887634)
chr5 (96-145)||(38162727-38162776)
chr5 (99-138)||(26365899-26365938)
chr5 (96-130)||(4888756-4888790)
[»] chr4 (13 HSPs)
chr4 (96-145)||(8671874-8671923)
chr4 (96-145)||(14816678-14816727)
chr4 (96-145)||(6033744-6033793)
chr4 (96-139)||(53060550-53060593)
chr4 (96-145)||(31761682-31761731)
chr4 (96-145)||(38829881-38829930)
chr4 (96-130)||(29776688-29776722)
chr4 (100-145)||(29775494-29775539)
chr4 (96-145)||(33167943-33167992)
chr4 (96-145)||(38828702-38828751)
chr4 (96-145)||(55317912-55317961)
chr4 (96-145)||(44271809-44271858)
chr4 (96-145)||(51543123-51543172)
[»] chr3 (27 HSPs)
chr3 (96-145)||(17256762-17256811)
chr3 (96-145)||(55093285-55093334)
chr3 (96-140)||(50764062-50764106)
chr3 (96-145)||(5635541-5635590)
chr3 (96-145)||(46985016-46985065)
chr3 (96-145)||(49002573-49002622)
chr3 (96-145)||(54476237-54476286)
chr3 (98-145)||(17257943-17257990)
chr3 (96-138)||(10730602-10730644)
chr3 (96-145)||(2181449-2181498)
chr3 (96-145)||(32771930-32771979)
chr3 (96-145)||(33445973-33446022)
chr3 (96-145)||(33447102-33447151)
chr3 (96-145)||(33943721-33943770)
chr3 (96-145)||(33944299-33944348)
chr3 (96-145)||(40989469-40989518)
chr3 (96-145)||(49001844-49001893)
chr3 (96-145)||(51225120-51225169)
chr3 (96-145)||(51226322-51226371)
chr3 (96-145)||(54477140-54477189)
chr3 (101-145)||(55094455-55094499)
chr3 (96-138)||(35495019-35495061)
chr3 (96-145)||(35494195-35494244)
chr3 (96-145)||(50381438-50381487)
chr3 (96-136)||(50380290-50380330)
chr3 (96-127)||(2182498-2182529)
chr3 (96-145)||(32770785-32770834)
[»] chr2 (17 HSPs)
chr2 (96-145)||(16144758-16144807)
chr2 (96-146)||(11364015-11364065)
chr2 (96-145)||(14983400-14983449)
chr2 (96-145)||(16143859-16143908)
chr2 (96-145)||(23048484-23048533)
chr2 (96-145)||(23049635-23049684)
chr2 (96-145)||(52110-52159)
chr2 (96-145)||(14983770-14983819)
chr2 (96-145)||(43891489-43891538)
chr2 (96-145)||(44078361-44078410)
chr2 (96-139)||(21631995-21632038)
chr2 (96-145)||(23686006-23686055)
chr2 (96-145)||(35920997-35921046)
chr2 (96-145)||(43890294-43890343)
chr2 (96-145)||(44077204-44077253)
chr2 (96-145)||(23686633-23686680)
chr2 (96-145)||(28719511-28719560)
[»] chr1 (15 HSPs)
chr1 (96-145)||(21259860-21259909)
chr1 (96-145)||(51462939-51462988)
chr1 (96-145)||(4476072-4476121)
chr1 (96-145)||(7058194-7058243)
chr1 (96-145)||(39277160-39277209)
chr1 (96-145)||(50877688-50877737)
chr1 (96-145)||(4474890-4474939)
chr1 (96-145)||(6743017-6743066)
chr1 (96-145)||(49695544-49695593)
chr1 (96-145)||(50876287-50876336)
chr1 (96-145)||(21259053-21259102)
chr1 (96-145)||(49696736-49696785)
chr1 (96-145)||(50504622-50504671)
chr1 (96-145)||(51549211-51549260)
chr1 (96-136)||(7057131-7057171)
[»] scaffold0286 (1 HSPs)
scaffold0286 (96-145)||(20241-20290)
[»] scaffold0016 (1 HSPs)
scaffold0016 (96-145)||(201064-201113)
[»] chr8 (12 HSPs)
chr8 (96-145)||(23936471-23936520)
chr8 (100-145)||(5916731-5916776)
chr8 (96-145)||(8347743-8347792)
chr8 (96-145)||(42073973-42074022)
chr8 (96-145)||(42075107-42075156)
chr8 (96-138)||(8348842-8348885)
chr8 (98-145)||(45309454-45309501)
chr8 (96-145)||(12278969-12279019)
chr8 (105-145)||(305402-305442)
chr8 (101-139)||(8951536-8951574)
chr8 (96-145)||(8952693-8952742)
chr8 (96-129)||(20788184-20788217)
[»] scaffold0854 (2 HSPs)
scaffold0854 (96-138)||(3198-3240)
scaffold0854 (96-145)||(2037-2086)


Alignment Details
Target: chr6 (Bit Score: 242; Significance: 1e-134; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 160 - 488
Target Start/End: Original strand, 18290977 - 18291306
Alignment:
Q  160 cttgttcgttgatccacctatgtttcatgtttgtatcacattggccatcttccaatcttcgagtagatgactagttaattccaatgtatggacatttgtc 259  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||| |||| ||||||||| |||||||||||||||||||    
T  18290977 cttgttcgttgatccacctatgttacatgtttgtatcacattagccatgttccaatcttcgagtaaatgagtagttaatttcaatgtatggacatttgtc 18291076  T
Q  260 tcatcaacatgctcccatagcttcaaatttataaatttccataagctccacaaaatgattgcaaatctttcacgttgaaatgcat-gtatctatgcaaag 358  Q
    ||||||||||  | ||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||| |||||||||||| | ||||||||||||    
T  18291077 tcatcaacatttttccatagcttcagatttatgaatttccataagcttcacaaaatgattgcaaatctttcatgttgaaatgcatggaatctatgcaaag 18291176  T
Q  359 gcataaacatcgcaacctccatattataatgtccccatagtgctttatcaatctcttcccataaatttgttgcacgccacacttgcactgctctaagaca 458  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  18291177 gcataaacatcacaacctccatattttaatgtccccatagtgctttatcaatctcttcccataagtttgttgcacgccacacttgcactgctctaagaca 18291276  T
Q  459 ctccaacaatgtgtgtatagtatctttata 488  Q
    |||||||| ||||| |||| ||||||||||    
T  18291277 ctccaacagtgtgtatatactatctttata 18291306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 96 - 145
Target Start/End: Original strand, 2173750 - 2173799
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcattga 145  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  2173750 aattaaaacaatgcacacgtggcggctttgaagtgccacgttagcattga 2173799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 96 - 145
Target Start/End: Complemental strand, 4792514 - 4792465
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcattga 145  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  4792514 aattaaaacaatgcacatgtggcggctttgaagtgccacgtcagcattga 4792465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 96 - 145
Target Start/End: Complemental strand, 29873282 - 29873233
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcattga 145  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  29873282 aattaaaacaatgcacacgtggcggctttgaagtgccacgtcagcgttga 29873233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 96 - 145
Target Start/End: Complemental strand, 2017355 - 2017306
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcattga 145  Q
    |||||||||||||||||||||||| |||||||||| ||||||||| ||||    
T  2017355 aattaaaacaatgcacacgtggcgcctttgaagtgccacgtcagcgttga 2017306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 96 - 145
Target Start/End: Complemental strand, 22516184 - 22516135
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcattga 145  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||| ||||    
T  22516184 aattaaaacaatgaacacgtggcggatttgaagtgtcacgtcagcgttga 22516135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 99 - 139
Target Start/End: Original strand, 4793650 - 4793690
Alignment:
Q  99 taaaacaatgcacacgtggcggctttgaagtgtcacgtcag 139  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  4793650 taaaacaatgcacacgtggcggctttgaagtgccacgtcag 4793690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 96 - 145
Target Start/End: Complemental strand, 11623402 - 11623353
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcattga 145  Q
    ||||||||||||||||||||||| ||||||||||| ||||| ||| ||||    
T  11623402 aattaaaacaatgcacacgtggcagctttgaagtgccacgttagcgttga 11623353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 96 - 145
Target Start/End: Original strand, 11624179 - 11624228
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcattga 145  Q
    |||||||||||||||||||||||| |||||||| | ||||||||| ||||    
T  11624179 aattaaaacaatgcacacgtggcgcctttgaagagccacgtcagcgttga 11624228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 96 - 138
Target Start/End: Original strand, 22517304 - 22517346
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtca 138  Q
    |||||||||||||||||||||||||| ||||| || |||||||    
T  22517304 aattaaaacaatgcacacgtggcggccttgaaatgccacgtca 22517346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 145
Target Start/End: Original strand, 2018328 - 2018377
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcattga 145  Q
    |||||||||||||| |||| ||||||||||| ||| ||||||||| ||||    
T  2018328 aattaaaacaatgcccacgcggcggctttgacgtgccacgtcagcgttga 2018377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 145
Target Start/End: Original strand, 29874334 - 29874383
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcattga 145  Q
    ||||||||||||||||| |||| | |||||||  ||||||||||||||||    
T  29874334 aattaaaacaatgcacatgtggtgcctttgaaaggtcacgtcagcattga 29874383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 96 - 145
Target Start/End: Complemental strand, 23033 - 22984
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcattga 145  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  23033 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcgttga 22984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 96 - 145
Target Start/End: Complemental strand, 30503890 - 30503841
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcattga 145  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  30503890 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcgttga 30503841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 96 - 145
Target Start/End: Complemental strand, 24278312 - 24278263
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcattga 145  Q
    ||||||||||||||||||||| || |||||||||||||||||||| ||||    
T  24278312 aattaaaacaatgcacacgtgacgcctttgaagtgtcacgtcagcgttga 24278263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 96 - 145
Target Start/End: Complemental strand, 26974473 - 26974424
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcattga 145  Q
    |||| |||||||||||| ||||||||||||||||||||||||||| ||||    
T  26974473 aattgaaacaatgcacatgtggcggctttgaagtgtcacgtcagcgttga 26974424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 96 - 145
Target Start/End: Original strand, 30505012 - 30505061
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcattga 145  Q
    ||||||||||||||| | ||||||||||||||||||||||||||| ||||    
T  30505012 aattaaaacaatgcaaatgtggcggctttgaagtgtcacgtcagcgttga 30505061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 96 - 145
Target Start/End: Original strand, 42437847 - 42437896
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcattga 145  Q
    ||||||||||||||||| |||||||||||||||||||| |||||| ||||    
T  42437847 aattaaaacaatgcacatgtggcggctttgaagtgtcatgtcagcgttga 42437896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 96 - 140
Target Start/End: Original strand, 24279435 - 24279479
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagc 140  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||    
T  24279435 aattaaaacaatgcgcacgtggcggctttgaagtgtcatgtcagc 24279479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 96 - 145
Target Start/End: Complemental strand, 42437071 - 42437022
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcattga 145  Q
    ||||||||||||| |||||||||| |||||||||| ||||||||| ||||    
T  42437071 aattaaaacaatgtacacgtggcgcctttgaagtgccacgtcagcgttga 42437022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 5e-17; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 96 - 145
Target Start/End: Original strand, 38974757 - 38974806
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcattga 145  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  38974757 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcgttga 38974806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 96 - 145
Target Start/End: Original strand, 22471768 - 22471817
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcattga 145  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  22471768 aattaaaacaatgcacacgtggcggctttgaagtgccacgtcagcgttga 22471817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 96 - 145
Target Start/End: Complemental strand, 26364788 - 26364739
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcattga 145  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  26364788 aattaaaacaatgcacacgtggcggctttaaagtgtcacgtcagcgttga 26364739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 96 - 145
Target Start/End: Original strand, 38163546 - 38163595
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcattga 145  Q
    |||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  38163546 aattaaaacaatgcacacgtggtggctttgaagtgtcacgtcagcgttga 38163595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 96 - 145
Target Start/End: Complemental strand, 38973569 - 38973520
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcattga 145  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  38973569 aattaaaacaatgcacacatggcggctttgaagtgtcacgtcagcgttga 38973520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 96 - 136
Target Start/End: Original strand, 41083160 - 41083200
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgt 136  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  41083160 aattaaaacaatgcacacgtggcggctttgaagtgtcacgt 41083200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 96 - 135
Target Start/End: Complemental strand, 38973659 - 38973620
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacg 135  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  38973659 aattaaaacaatgcacacatggcggctttgaagtgtcacg 38973620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 96 - 145
Target Start/End: Complemental strand, 4887634 - 4887585
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcattga 145  Q
    |||||||||||||||||| ||||||||||||| || ||||||||| ||||    
T  4887634 aattaaaacaatgcacacttggcggctttgaaatgccacgtcagcgttga 4887585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 96 - 145
Target Start/End: Complemental strand, 38162776 - 38162727
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcattga 145  Q
    |||||||||||||||||||||||| |||||||||| ||| ||||| ||||    
T  38162776 aattaaaacaatgcacacgtggcgcctttgaagtgccacatcagcgttga 38162727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 138
Target Start/End: Original strand, 26365899 - 26365938
Alignment:
Q  99 taaaacaatgcacacgtggcggctttgaagtgtcacgtca 138  Q
    ||||| |||||||||||||||||||||||||| |||||||    
T  26365899 taaaaaaatgcacacgtggcggctttgaagtgccacgtca 26365938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 96 - 130
Target Start/End: Original strand, 4888756 - 4888790
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtg 130  Q
    |||||||||||||||||||||||| ||||||||||    
T  4888756 aattaaaacaatgcacacgtggcgtctttgaagtg 4888790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 96 - 145
Target Start/End: Original strand, 8671874 - 8671923
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcattga 145  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  8671874 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcgttga 8671923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 96 - 145
Target Start/End: Original strand, 14816678 - 14816727
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcattga 145  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  14816678 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcgttga 14816727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 96 - 145
Target Start/End: Original strand, 6033744 - 6033793
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcattga 145  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  6033744 aattaaaacaatgcacacgtggcggctttgaagtgccacgtcagcgttga 6033793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 96 - 139
Target Start/End: Complemental strand, 53060593 - 53060550
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcag 139  Q
    |||||||||||||| |||||||||||||||||||||||||||||    
T  53060593 aattaaaacaatgctcacgtggcggctttgaagtgtcacgtcag 53060550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 96 - 145
Target Start/End: Original strand, 31761682 - 31761731
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcattga 145  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||| ||||    
T  31761682 aattaaaacaatgcacatgtggcggctttgaagtgccacgtcagcgttga 31761731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 96 - 145
Target Start/End: Original strand, 38829881 - 38829930
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcattga 145  Q
    |||||||||||||||||||||||| |||||||||| ||||||||| ||||    
T  38829881 aattaaaacaatgcacacgtggcgcctttgaagtgccacgtcagcgttga 38829930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 96 - 130
Target Start/End: Original strand, 29776688 - 29776722
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtg 130  Q
    |||||||||||||||||||||||||||||||||||    
T  29776688 aattaaaacaatgcacacgtggcggctttgaagtg 29776722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 100 - 145
Target Start/End: Complemental strand, 29775539 - 29775494
Alignment:
Q  100 aaaacaatgcacacgtggcggctttgaagtgtcacgtcagcattga 145  Q
    ||||||||||||||||| | ||||| ||||||||||||||||||||    
T  29775539 aaaacaatgcacacgtgactgctttaaagtgtcacgtcagcattga 29775494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 96 - 145
Target Start/End: Original strand, 33167943 - 33167992
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcattga 145  Q
    |||||||||||||||||||||||  |||||||||| ||||||||| ||||    
T  33167943 aattaaaacaatgcacacgtggcatctttgaagtgccacgtcagcgttga 33167992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 96 - 145
Target Start/End: Complemental strand, 38828751 - 38828702
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcattga 145  Q
    ||||||||||||||||| ||||||||||||||||| ||| ||||| ||||    
T  38828751 aattaaaacaatgcacatgtggcggctttgaagtgccacatcagcgttga 38828702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 96 - 145
Target Start/End: Original strand, 55317912 - 55317961
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcattga 145  Q
    |||||||||||||||||| ||| |||||||||||| ||||||||| ||||    
T  55317912 aattaaaacaatgcacacatggtggctttgaagtgccacgtcagcgttga 55317961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 145
Target Start/End: Original strand, 44271809 - 44271858
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcattga 145  Q
    ||||||||||||||||| | |||| ||||||||||| |||||||| ||||    
T  44271809 aattaaaacaatgcacatgcggcgcctttgaagtgtgacgtcagcgttga 44271858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 145
Target Start/End: Complemental strand, 51543172 - 51543123
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcattga 145  Q
    |||| ||||||||||| |||||||||||||||||| ||| ||||| ||||    
T  51543172 aatttaaacaatgcacgcgtggcggctttgaagtgccacatcagcgttga 51543123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 96 - 145
Target Start/End: Complemental strand, 17256811 - 17256762
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcattga 145  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  17256811 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcgttga 17256762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 96 - 145
Target Start/End: Complemental strand, 55093334 - 55093285
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcattga 145  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  55093334 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcgttga 55093285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 96 - 140
Target Start/End: Original strand, 50764062 - 50764106
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagc 140  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  50764062 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagc 50764106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 96 - 145
Target Start/End: Complemental strand, 5635590 - 5635541
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcattga 145  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  5635590 aattaaaacaatgcacacgtggcggctttaaagtgtcacgtcagcgttga 5635541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 96 - 145
Target Start/End: Complemental strand, 46985065 - 46985016
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcattga 145  Q
    |||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  46985065 aattaaaacaatgcacacgtggaggctttgaagtgtcacgtcagcgttga 46985016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 96 - 145
Target Start/End: Original strand, 49002573 - 49002622
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcattga 145  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  49002573 aattaaaacaatgcacacgtggcggctttgaagttccacgtcagcattga 49002622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 96 - 145
Target Start/End: Complemental strand, 54476286 - 54476237
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcattga 145  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  54476286 aattaaaacaatgcacacatggcggctttgaagtgtcacgtcagcgttga 54476237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 98 - 145
Target Start/End: Original strand, 17257943 - 17257990
Alignment:
Q  98 ttaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcattga 145  Q
    ||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  17257943 ttaaaacaatgcacacgtggcggctttgaagtgccacgtcagcgttga 17257990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 96 - 138
Target Start/End: Complemental strand, 10730644 - 10730602
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtca 138  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  10730644 aattaaaacaatgcacacgtggtggctttgaagtgtcacgtca 10730602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 96 - 145
Target Start/End: Complemental strand, 2181498 - 2181449
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcattga 145  Q
    |||| |||||||||||||||||||||||||||||| ||||||||| ||||    
T  2181498 aattgaaacaatgcacacgtggcggctttgaagtgccacgtcagcgttga 2181449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 96 - 145
Target Start/End: Original strand, 32771930 - 32771979
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcattga 145  Q
    |||||||||||||||||||||| |||||||||||| ||||||||| ||||    
T  32771930 aattaaaacaatgcacacgtggtggctttgaagtgccacgtcagcgttga 32771979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 96 - 145
Target Start/End: Complemental strand, 33446022 - 33445973
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcattga 145  Q
    ||||||||||||||||||||||||||||||||||| || |||||| ||||    
T  33446022 aattaaaacaatgcacacgtggcggctttgaagtgccatgtcagcgttga 33445973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 96 - 145
Target Start/End: Original strand, 33447102 - 33447151
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcattga 145  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||| ||||    
T  33447102 aattaaaacaatgcacacgtgacggctttgaagtgccacgtcagcgttga 33447151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 96 - 145
Target Start/End: Complemental strand, 33943770 - 33943721
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcattga 145  Q
    |||||||||||||||||| |||||||||||||||| ||||||||| ||||    
T  33943770 aattaaaacaatgcacacatggcggctttgaagtgccacgtcagcgttga 33943721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 96 - 145
Target Start/End: Original strand, 33944299 - 33944348
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcattga 145  Q
    |||||||||||||||||||||||| |||||||||| ||||||||| ||||    
T  33944299 aattaaaacaatgcacacgtggcgcctttgaagtgccacgtcagcgttga 33944348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 96 - 145
Target Start/End: Original strand, 40989469 - 40989518
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcattga 145  Q
    |||||||||||||||||||||||| |||||||||| ||||||||| ||||    
T  40989469 aattaaaacaatgcacacgtggcgcctttgaagtgccacgtcagcgttga 40989518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 96 - 145
Target Start/End: Complemental strand, 49001893 - 49001844
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcattga 145  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||| ||||    
T  49001893 aattaaaacaatgcacacgtggcggctttaaagtgccacgtcagcgttga 49001844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 96 - 145
Target Start/End: Complemental strand, 51225169 - 51225120
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcattga 145  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||| ||||    
T  51225169 aattaaaacaatgcatacgtggcggctttgaagtgccacgtcagcgttga 51225120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 96 - 145
Target Start/End: Original strand, 51226322 - 51226371
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcattga 145  Q
    |||||||||||||||||||||||| |||||||||| ||||||||| ||||    
T  51226322 aattaaaacaatgcacacgtggcgcctttgaagtgccacgtcagcgttga 51226371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 96 - 145
Target Start/End: Original strand, 54477140 - 54477189
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcattga 145  Q
    |||||||||||||| |||||||||||||||||||| ||||||||| ||||    
T  54477140 aattaaaacaatgcgcacgtggcggctttgaagtgccacgtcagcgttga 54477189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 55094455 - 55094499
Alignment:
Q  101 aaacaatgcacacgtggcggctttgaagtgtcacgtcagcattga 145  Q
    |||||||||||||||||||||||||||||| ||||||||| ||||    
T  55094455 aaacaatgcacacgtggcggctttgaagtgccacgtcagcgttga 55094499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 96 - 138
Target Start/End: Original strand, 35495019 - 35495061
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtca 138  Q
    |||||||||||||||||| ||||||||||||||||||| ||||    
T  35495019 aattaaaacaatgcacacatggcggctttgaagtgtcatgtca 35495061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 96 - 145
Target Start/End: Complemental strand, 35494244 - 35494195
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcattga 145  Q
    |||||||||||||||||| ||||| |||||||||| ||||||||| ||||    
T  35494244 aattaaaacaatgcacacatggcgcctttgaagtgccacgtcagcgttga 35494195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 96 - 145
Target Start/End: Original strand, 50381438 - 50381487
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcattga 145  Q
    ||||||||||||||||| ||||||||||||||||| ||| ||||| ||||    
T  50381438 aattaaaacaatgcacatgtggcggctttgaagtgccacatcagcgttga 50381487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 96 - 136
Target Start/End: Complemental strand, 50380330 - 50380290
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgt 136  Q
    |||||||||||||||||| || |||||||||||||||||||    
T  50380330 aattaaaacaatgcacacctgacggctttgaagtgtcacgt 50380290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 127
Target Start/End: Original strand, 2182498 - 2182529
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaa 127  Q
    ||||||||||||||||||||||||||||||||    
T  2182498 aattaaaacaatgcacacgtggcggctttgaa 2182529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 145
Target Start/End: Complemental strand, 32770834 - 32770785
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcattga 145  Q
    ||||||||||||||||||||| || |||| ||||| ||||||||| ||||    
T  32770834 aattaaaacaatgcacacgtgtcgcctttaaagtgccacgtcagcgttga 32770785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 5e-17; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 96 - 145
Target Start/End: Original strand, 16144758 - 16144807
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcattga 145  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  16144758 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcgttga 16144807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 96 - 146
Target Start/End: Complemental strand, 11364065 - 11364015
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcattgaa 146  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  11364065 aattaaaacaatgcacacgtggcggctttgaagtgccacgtcagcgttgaa 11364015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 96 - 145
Target Start/End: Complemental strand, 14983449 - 14983400
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcattga 145  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  14983449 aattaaaacaatgcacacgtgacggctttgaagtgtcacgtcagcgttga 14983400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 96 - 145
Target Start/End: Complemental strand, 16143908 - 16143859
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcattga 145  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  16143908 aattaaaacaatgcacacgtggcagctttgaagtgccacgtcagcattga 16143859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 96 - 145
Target Start/End: Complemental strand, 23048533 - 23048484
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcattga 145  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  23048533 aattaaaacaatgcacacgtggcggctttgaagtgccacgtcagcgttga 23048484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 96 - 145
Target Start/End: Original strand, 23049635 - 23049684
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcattga 145  Q
    |||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  23049635 aattaaaacaatgcacacgtggcggctttgaagtgtcaggtcagcgttga 23049684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 96 - 145
Target Start/End: Original strand, 52110 - 52159
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcattga 145  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||| ||||    
T  52110 aattaaaacaatgcacatgtggcggctttgaagtgccacgtcagcgttga 52159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 96 - 145
Target Start/End: Original strand, 14983770 - 14983819
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcattga 145  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||| ||||    
T  14983770 aattaaaacaatgcacatgtggcggctttgaagtgccacgtcagcgttga 14983819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 96 - 145
Target Start/End: Original strand, 43891489 - 43891538
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcattga 145  Q
    |||||||||||||||||||||||| |||||||||| ||||||||| ||||    
T  43891489 aattaaaacaatgcacacgtggcgcctttgaagtgccacgtcagcgttga 43891538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 96 - 145
Target Start/End: Original strand, 44078361 - 44078410
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcattga 145  Q
    |||||||| ||||||||||||||||||||||||||||| |||||| ||||    
T  44078361 aattaaaaaaatgcacacgtggcggctttgaagtgtcatgtcagcgttga 44078410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 96 - 139
Target Start/End: Complemental strand, 21632038 - 21631995
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcag 139  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||    
T  21632038 aattaaaacaatgcacacgtggcagctttgaagtgccacgtcag 21631995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 96 - 145
Target Start/End: Complemental strand, 23686055 - 23686006
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcattga 145  Q
    ||||||| ||||||||||||| ||||||||||||| ||||||||| ||||    
T  23686055 aattaaagcaatgcacacgtgacggctttgaagtgccacgtcagcgttga 23686006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 96 - 145
Target Start/End: Original strand, 35920997 - 35921046
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcattga 145  Q
    |||||||||||||||||| |||||  ||||||||||||||||||| ||||    
T  35920997 aattaaaacaatgcacacatggcgcttttgaagtgtcacgtcagcgttga 35921046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 96 - 145
Target Start/End: Complemental strand, 43890343 - 43890294
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcattga 145  Q
    ||||||||||| ||||||||||||||||||||||| || |||||| ||||    
T  43890343 aattaaaacaaagcacacgtggcggctttgaagtgccatgtcagcgttga 43890294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 96 - 145
Target Start/End: Complemental strand, 44077253 - 44077204
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcattga 145  Q
    ||||||||||||||| ||||| ||||||||||||| ||||||||| ||||    
T  44077253 aattaaaacaatgcatacgtgacggctttgaagtgccacgtcagcgttga 44077204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 96 - 145
Target Start/End: Original strand, 23686633 - 23686680
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcattga 145  Q
    |||||||||||||||||||  ||| |||||||||||||||||||| ||||    
T  23686633 aattaaaacaatgcacacg--gcgcctttgaagtgtcacgtcagcgttga 23686680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 145
Target Start/End: Complemental strand, 28719560 - 28719511
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcattga 145  Q
    ||||||||||||||||| |||| | |||||||||| ||||||||| ||||    
T  28719560 aattaaaacaatgcacatgtggtgcctttgaagtgccacgtcagcgttga 28719511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 96 - 145
Target Start/End: Original strand, 21259860 - 21259909
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcattga 145  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  21259860 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcgttga 21259909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 96 - 145
Target Start/End: Original strand, 51462939 - 51462988
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcattga 145  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  51462939 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcgttga 51462988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 96 - 145
Target Start/End: Original strand, 4476072 - 4476121
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcattga 145  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  4476072 aattaaaacaatgcacacgtggcggctttgaagtgccacgtcagcgttga 4476121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 96 - 145
Target Start/End: Original strand, 7058194 - 7058243
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcattga 145  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  7058194 aattaaaacaatgcacacgtggcggctttgaagtgccacgtcagcgttga 7058243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 96 - 145
Target Start/End: Complemental strand, 39277209 - 39277160
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcattga 145  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  39277209 aattaaaacaatgcacacgtggcggctttgaagtgccacgtcagcgttga 39277160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 96 - 145
Target Start/End: Original strand, 50877688 - 50877737
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcattga 145  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  50877688 aattaaaacaatgcacacgtggcggctttgaagtgccacgtcagcgttga 50877737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 96 - 145
Target Start/End: Complemental strand, 4474939 - 4474890
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcattga 145  Q
    ||||||||||||||||||||| || |||||||||||||||||||| ||||    
T  4474939 aattaaaacaatgcacacgtgacgcctttgaagtgtcacgtcagcgttga 4474890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 96 - 145
Target Start/End: Complemental strand, 6743066 - 6743017
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcattga 145  Q
    |||||||||||||||||||||||| |||||||||| ||||||||| ||||    
T  6743066 aattaaaacaatgcacacgtggcgtctttgaagtgccacgtcagcgttga 6743017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 96 - 145
Target Start/End: Complemental strand, 49695593 - 49695544
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcattga 145  Q
    ||||||||||||||||| |||||| |||||||||||||||||||| ||||    
T  49695593 aattaaaacaatgcacatgtggcgactttgaagtgtcacgtcagcgttga 49695544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 96 - 145
Target Start/End: Complemental strand, 50876336 - 50876287
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcattga 145  Q
    |||||||||||||||||| |||||||||||||||| ||||||| ||||||    
T  50876336 aattaaaacaatgcacacatggcggctttgaagtgacacgtcaccattga 50876287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 96 - 145
Target Start/End: Complemental strand, 21259102 - 21259053
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcattga 145  Q
    |||||||||||||||||||||||| |||||||||| ||| ||||| ||||    
T  21259102 aattaaaacaatgcacacgtggcgcctttgaagtgccacttcagcgttga 21259053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 96 - 145
Target Start/End: Original strand, 49696736 - 49696785
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcattga 145  Q
    ||||||||||||||||| |||||| |||||||||| ||||||||| ||||    
T  49696736 aattaaaacaatgcacatgtggcgcctttgaagtgccacgtcagcgttga 49696785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 96 - 145
Target Start/End: Original strand, 50504622 - 50504671
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcattga 145  Q
    |||||||||||||||||||||||| |||||||||| ||||| ||| ||||    
T  50504622 aattaaaacaatgcacacgtggcgcctttgaagtgccacgtaagcgttga 50504671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 96 - 145
Target Start/End: Original strand, 51549211 - 51549260
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcattga 145  Q
    |||||||||||||||||||||||| |||||||||| ||||| ||| ||||    
T  51549211 aattaaaacaatgcacacgtggcgcctttgaagtgccacgttagcgttga 51549260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 96 - 136
Target Start/End: Complemental strand, 7057171 - 7057131
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgt 136  Q
    |||||||| |||||||||||||||||||||||||| |||||    
T  7057171 aattaaaaaaatgcacacgtggcggctttgaagtgccacgt 7057131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 96 - 145
Target Start/End: Complemental strand, 20290 - 20241
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcattga 145  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  20290 aattaaaacaatgcacacgtggcggctttgaagtgccacgttagcattga 20241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 96 - 145
Target Start/End: Original strand, 201064 - 201113
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcattga 145  Q
    |||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  201064 aattaaaaaaatgcacacgtggcggctttgaagtgtcacgtcagcgttga 201113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 96 - 145
Target Start/End: Complemental strand, 23936520 - 23936471
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcattga 145  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  23936520 aattaaaacaatgtacacgtggcggctttgaagtgtcacgtcagcgttga 23936471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 100 - 145
Target Start/End: Original strand, 5916731 - 5916776
Alignment:
Q  100 aaaacaatgcacacgtggcggctttgaagtgtcacgtcagcattga 145  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||    
T  5916731 aaaaaaatgcacacgtggcggctttgaagtgtcacgtcagcgttga 5916776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 96 - 145
Target Start/End: Complemental strand, 8347792 - 8347743
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcattga 145  Q
    |||||||||||||||||||||||| |||||||||||||| ||||| ||||    
T  8347792 aattaaaacaatgcacacgtggcgcctttgaagtgtcacatcagcgttga 8347743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 96 - 145
Target Start/End: Complemental strand, 42074022 - 42073973
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcattga 145  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||| ||||    
T  42074022 aattaaaacaatgcacacgtggcggctttgaagtgccacgttagcgttga 42073973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 96 - 145
Target Start/End: Original strand, 42075107 - 42075156
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcattga 145  Q
    |||||||||||||||||||||| |||||||||||| ||||||||| ||||    
T  42075107 aattaaaacaatgcacacgtggtggctttgaagtgccacgtcagcgttga 42075156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 96 - 138
Target Start/End: Original strand, 8348842 - 8348885
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttg-aagtgtcacgtca 138  Q
    |||||||||||||||||||||||||||||| |||||||||||||    
T  8348842 aattaaaacaatgcacacgtggcggctttgaaagtgtcacgtca 8348885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 98 - 145
Target Start/End: Original strand, 45309454 - 45309501
Alignment:
Q  98 ttaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcattga 145  Q
    ||||||||||||||||||||||||||| ||||| ||||||||| ||||    
T  45309454 ttaaaacaatgcacacgtggcggcttttaagtgccacgtcagcgttga 45309501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 96 - 145
Target Start/End: Complemental strand, 12279019 - 12278969
Alignment:
Q  96 aattaaaacaatgcacacgtgg-cggctttgaagtgtcacgtcagcattga 145  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||| ||||    
T  12279019 aattaaaacaatgcacacgtggccggctttgaagtgccacgtcagcgttga 12278969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 105 - 145
Target Start/End: Complemental strand, 305442 - 305402
Alignment:
Q  105 aatgcacacgtggcggctttgaagtgtcacgtcagcattga 145  Q
    |||||||||||||||||||||||||| ||||||||| ||||    
T  305442 aatgcacacgtggcggctttgaagtgccacgtcagcgttga 305402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 101 - 139
Target Start/End: Complemental strand, 8951574 - 8951536
Alignment:
Q  101 aaacaatgcacacgtggcggctttgaagtgtcacgtcag 139  Q
    ||||||||||||||| |||||||||||||| ||||||||    
T  8951574 aaacaatgcacacgtagcggctttgaagtgccacgtcag 8951536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 145
Target Start/End: Original strand, 8952693 - 8952742
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcattga 145  Q
    |||||||||||||||||||||||  |||||||||| ||| ||||| ||||    
T  8952693 aattaaaacaatgcacacgtggcacctttgaagtgccacatcagcgttga 8952742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 129
Target Start/End: Complemental strand, 20788217 - 20788184
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagt 129  Q
    ||||||||||||||||||||||| ||||||||||    
T  20788217 aattaaaacaatgcacacgtggcagctttgaagt 20788184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0854 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: scaffold0854
Description:

Target: scaffold0854; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 96 - 138
Target Start/End: Original strand, 3198 - 3240
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtca 138  Q
    ||||||||||||||||| ||||||||||| ||||| |||||||    
T  3198 aattaaaacaatgcacatgtggcggcttttaagtgccacgtca 3240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0854; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 145
Target Start/End: Complemental strand, 2086 - 2037
Alignment:
Q  96 aattaaaacaatgcacacgtggcggctttgaagtgtcacgtcagcattga 145  Q
    |||||||||||||||||||||||| || ||| ||| ||||||||| ||||    
T  2086 aattaaaacaatgcacacgtggcgcctatgaggtgccacgtcagcgttga 2037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University