View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18901_low_31 (Length: 227)

Name: NF18901_low_31
Description: NF18901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18901_low_31
NF18901_low_31
[»] chr7 (2 HSPs)
chr7 (18-217)||(8131983-8132182)
chr7 (62-207)||(21549585-21549730)
[»] chr8 (3 HSPs)
chr8 (123-207)||(5211236-5211320)
chr8 (65-204)||(33823812-33823951)
chr8 (122-207)||(28437307-28437392)
[»] chr2 (1 HSPs)
chr2 (50-204)||(3945850-3946004)
[»] chr4 (3 HSPs)
chr4 (50-207)||(22483385-22483542)
chr4 (152-204)||(35721705-35721757)
chr4 (153-215)||(7435185-7435247)
[»] chr5 (1 HSPs)
chr5 (155-204)||(13481016-13481065)
[»] chr3 (1 HSPs)
chr3 (65-185)||(41086156-41086276)


Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 18 - 217
Target Start/End: Original strand, 8131983 - 8132182
Alignment:
Q  18 attttgatactgaatttcctcttcttcttttattgttccttctacaaccacctccaacaggaacgtttcgaagtgcaccacctttagtccaataacgacg 117  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8131983 attttgatactgaatttccttttcttcttttattgttccttctacaaccacctccaacaggaacgtttcgaagtgcaccacctttagtccaataacgacg 8132082  T
Q  118 acaagttttgcaaaaatggcgtggttgtgaaagattgtagttgttgtagtagcagaactttgtgtttgttgattcacatcttggacatttctgtgctgct 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8132083 acaagttttgcaaaaatggcgtggttgtgaaagattgtagttgttgtagtagcagaactttgtgtttgttgattcacatcttggacatttctgtgctgct 8132182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 62 - 207
Target Start/End: Complemental strand, 21549730 - 21549585
Alignment:
Q  62 caaccacctccaacaggaacgtttcgaagtgcaccacctttagtccaataacgacgacaagttttgcaaaaatggcgtggttgtgaaagattgtagttgt 161  Q
    |||||||| ||||| || ||  ||| ||| |||||||| || |||||||| |  |||||||  ||||| || || || || || || ||| |||||||||    
T  21549730 caaccaccgccaaccgggacacttctaagggcaccaccctttgtccaataccttcgacaagccttgcagaagtgtcgcggctgcgagagactgtagttgt 21549631  T
Q  162 tgtagtagcagaactttgtgtttgttgattcacatcttggacattt 207  Q
    || ||||||| ||||||||||| || || ||||| |||||||||||    
T  21549630 tgaagtagcaaaactttgtgttggtggaatcacaccttggacattt 21549585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 2e-26; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 123 - 207
Target Start/End: Original strand, 5211236 - 5211320
Alignment:
Q  123 ttttgcaaaaatggcgtggttgtgaaagattgtagttgttgtagtagcagaactttgtgtttgttgattcacatcttggacattt 207  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||  |||||||||| | |||||||||    
T  5211236 ttttgcaaaaatggcgtggttgtgagagattgtagttgttgtagtagcagaattttgtgttgtttgattcacaacgtggacattt 5211320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 65 - 204
Target Start/End: Complemental strand, 33823951 - 33823812
Alignment:
Q  65 ccacctccaacaggaacgtttcgaagtgcaccacctttagtccaataacgacgacaagttttgcaaaaatggcgtggttgtgaaagattgtagttgttgt 164  Q
    ||||||||||  ||||||||||  |  ||||| ||||| |||||||||||||| || || ||||| |||||||| || || |  || || ||||||||||    
T  33823951 ccacctccaattggaacgtttcttaaagcacctccttttgtccaataacgacggcatgtcttgcagaaatggcgaggctgagtgaggttatagttgttgt 33823852  T
Q  165 agtagcagaactttgtgtttgttgattcacatcttggaca 204  Q
    |||| || || |||||||||| ||| || |||||||||||    
T  33823851 agtaacaaaattttgtgtttgatgagtcgcatcttggaca 33823812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 122 - 207
Target Start/End: Complemental strand, 28437392 - 28437307
Alignment:
Q  122 gttttgcaaaaatggcgtggttgtgaaagattgtagttgttgtagtagcagaactttgtgtttgttgattcacatcttggacattt 207  Q
    |||||||| ||||| | |||||| |  ||| |||||||||||||||| ||||| ||||||||||  || |||||||||||||||||    
T  28437392 gttttgcagaaatgtcttggttgagtgagactgtagttgttgtagtaacagaattttgtgtttggagaatcacatcttggacattt 28437307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 50 - 204
Target Start/End: Original strand, 3945850 - 3946004
Alignment:
Q  50 ttgttccttctacaaccacctccaacaggaacgtttcgaagtgcaccacctttagtccaataacgacgacaagttttgcaaaaatggcgtggttgtgaaa 149  Q
    ||||| |||||  ||||||| ||||||||||| |||| ||| | ||||||| | |||||||||||    |||| ||| || ||||| | ||||||||| |    
T  3945850 ttgtttcttctgtaaccaccaccaacaggaacatttctaagagtaccacctcttgtccaataacgtttgcaagctttacagaaatgtcttggttgtgaca 3945949  T
Q  150 gattgtagttgttgtagtagcagaactttgtgtttgttgattcacatcttggaca 204  Q
     | |||||||||||||||| || ||||||||||||| ||| ||||| | ||||||    
T  3945950 aactgtagttgttgtagtaacaaaactttgtgtttgatgagtcacaacgtggaca 3946004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 50 - 207
Target Start/End: Original strand, 22483385 - 22483542
Alignment:
Q  50 ttgttccttctacaaccacctccaacaggaacgtttcgaagtgcaccacctttagtccaataacgacgacaagttttgcaaaaatggcgtggttgtgaaa 149  Q
    |||||| ||| ||| || || ||||||||||| || |  |||| |||||||||||||||||| |  | |||||  ||||| ||||  | |||||||||||    
T  22483385 ttgttctttcgacaccccccaccaacaggaacattccttagtgtaccacctttagtccaatatctcctacaagacttgcagaaatatcttggttgtgaaa 22483484  T
Q  150 gattgtagttgttgtagtagcagaactttgtgtttgttgattcacatcttggacattt 207  Q
    || |||| ||||||||||| || || || |||||  |||| |||||||||||||||||    
T  22483485 gactgtaattgttgtagtaacaaaatttggtgttgtttgagtcacatcttggacattt 22483542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 152 - 204
Target Start/End: Complemental strand, 35721757 - 35721705
Alignment:
Q  152 ttgtagttgttgtagtagcagaactttgtgtttgttgattcacatcttggaca 204  Q
    ||||| ||||||||||| || ||||||||||||||||| ||||||||||||||    
T  35721757 ttgtaattgttgtagtaacaaaactttgtgtttgttgaatcacatcttggaca 35721705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 153 - 215
Target Start/End: Complemental strand, 7435247 - 7435185
Alignment:
Q  153 tgtagttgttgtagtagcagaactttgtgtttgttgattcacatcttggacatttctgtgctg 215  Q
    ||||||||||| ||||||| || |||||||| ||||||||||| | |||||||||| ||||||    
T  7435247 tgtagttgttgaagtagcaaaattttgtgttggttgattcacaacgtggacatttcagtgctg 7435185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 204
Target Start/End: Complemental strand, 13481065 - 13481016
Alignment:
Q  155 tagttgttgtagtagcagaactttgtgtttgttgattcacatcttggaca 204  Q
    |||||||||||||||||||| |||||||| | ||| ||||||||||||||    
T  13481065 tagttgttgtagtagcagaattttgtgttgggtgagtcacatcttggaca 13481016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 185
Target Start/End: Original strand, 41086156 - 41086276
Alignment:
Q  65 ccacctccaacaggaacgtttcgaagtgcaccacctttagtccaataacgacgacaagttttgcaaaaatggcgtggttgtgaaagattgtagttgttgt 164  Q
    ||||| ||||||||||| || ||||| |  |||||||| ||||||||||| | ||||  |||||||||||  ||||| || || |   |||| |||||||    
T  41086156 ccaccaccaacaggaacattccgaagagagccacctttggtccaataacgtctacaacctttgcaaaaataccgtggctgggacaagctgtaattgttgt 41086255  T
Q  165 agtagcagaactttgtgtttg 185  Q
    |||| ||||| || |||||||    
T  41086256 agtaacagaatttggtgtttg 41086276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University