View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18901_low_34 (Length: 219)
Name: NF18901_low_34
Description: NF18901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18901_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 6434331 - 6434176
Alignment:
| Q |
1 |
tatagtcatgatttcagaaaaattgtcctgtgaagcaaaaaatatcgattannnnnnnacacaacttaggagccagccaatacaaatattatgttttttc |
100 |
Q |
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| T |
6434331 |
tatagtcatgatttcagaaaatttgtcctgtgaagcaaaaattatcgattatttttttacacaacttaggagccagccaatacaaatattatgttttttc |
6434232 |
T |
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| Q |
101 |
ccttcctaaaacaaaatataatgtttttacagatacatataagttatttttcttga |
156 |
Q |
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| T |
6434231 |
ccttcctaaaacaaaatataatgtttttacagatacatataagttatttttcttga |
6434176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 170 - 209
Target Start/End: Complemental strand, 6434158 - 6434119
Alignment:
| Q |
170 |
gcgttttaaaaaacatagaccacctccattcatctcactc |
209 |
Q |
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| T |
6434158 |
gcgttttaaaaaacatagaccacctacattcatctcactc |
6434119 |
T |
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