View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18901_low_36 (Length: 213)

Name: NF18901_low_36
Description: NF18901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18901_low_36
NF18901_low_36
[»] chr6 (3 HSPs)
chr6 (6-198)||(34243464-34243653)
chr6 (108-171)||(11434596-11434659)
chr6 (118-166)||(11436425-11436473)
[»] chr7 (1 HSPs)
chr7 (97-170)||(4180993-4181066)
[»] chr5 (1 HSPs)
chr5 (102-162)||(24252293-24252353)
[»] chr2 (1 HSPs)
chr2 (108-170)||(39738811-39738873)


Alignment Details
Target: chr6 (Bit Score: 118; Significance: 2e-60; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 6 - 198
Target Start/End: Complemental strand, 34243653 - 34243464
Alignment:
Q  6 ggacatcatcattgaacaccttaattatatagcactgatgggcgattttgggtgaattcgtttgctcgaagaannnnnnnnnnnnnnnnnntgcacgtgg 105  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                  |||||||||    
T  34243653 ggacaacatcattgaacaccttaattatatagcactgatgggcgattttgggtgaattcgtttgctcgaagaagaggaggaggagagg---tgcacgtgg 34243557  T
Q  106 tattttaatggtgcatttaaatctcagccattaacttttaatcaaatggtcgataattattctcatgtacgtatgtgtatgtaggatttttct 198  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  34243556 tattttaatggagcatttaaatctcagccattaacttttaatcaaatggttgatagttattctcatgtacgtatgtgtatgtaggatttttct 34243464  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 171
Target Start/End: Complemental strand, 11434659 - 11434596
Alignment:
Q  108 ttttaatggtgcatttaaatctcagccattaacttttaatcaaatggtcgataattattctcat 171  Q
    ||||||| | |||||||||||||| |||||| ||||||||||||| || ||| |||||||||||    
T  11434659 ttttaattgagcatttaaatctcaaccattagcttttaatcaaatagttgatgattattctcat 11434596  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 166
Target Start/End: Original strand, 11436425 - 11436473
Alignment:
Q  118 gcatttaaatctcagccattaacttttaatcaaatggtcgataattatt 166  Q
    |||||||||||||| || ||| |||||||||||||||| ||||||||||    
T  11436425 gcatttaaatctcaaccgttagcttttaatcaaatggttgataattatt 11436473  T

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Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 97 - 170
Target Start/End: Original strand, 4180993 - 4181066
Alignment:
Q  97 tgcacgtggtattttaatggtgcatttaaatctcagccattaacttttaatcaaatggtcgataattattctca 170  Q
    |||| ||||||| ||||  | ||||||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  4180993 tgcatgtggtatattaagtgagcatttaaatctcagccataaacttttaatcaaatggttgataattattctca 4181066  T

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Target: chr5 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 102 - 162
Target Start/End: Original strand, 24252293 - 24252353
Alignment:
Q  102 gtggtattttaatggtgcatttaaatctcagccattaacttttaatcaaatggtcgataat 162  Q
    ||||||||||||| |  ||||||||||||||||||||||||||||||||||||| ||||||    
T  24252293 gtggtattttaattgaccatttaaatctcagccattaacttttaatcaaatggttgataat 24252353  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 108 - 170
Target Start/End: Original strand, 39738811 - 39738873
Alignment:
Q  108 ttttaatggtgcatttaaatctcagccattaacttttaatcaaatggtcgataattattctca 170  Q
    ||||||| | |||||||||||||| |||||| |||||||| ||||||| ||| ||||||||||    
T  39738811 ttttaattgagcatttaaatctcaaccattagcttttaattaaatggttgatgattattctca 39738873  T

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