View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18901_low_5 (Length: 457)

Name: NF18901_low_5
Description: NF18901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18901_low_5
NF18901_low_5
[»] chr7 (3 HSPs)
chr7 (1-271)||(23108237-23108506)
chr7 (251-346)||(32840070-32840165)
chr7 (304-387)||(46866939-46867023)
[»] chr1 (4 HSPs)
chr1 (128-443)||(38517675-38517984)
chr1 (8-70)||(38518012-38518075)
chr1 (298-387)||(51545859-51545949)
chr1 (298-387)||(43869841-43869930)
[»] chr6 (2 HSPs)
chr6 (31-442)||(2558596-2559020)
chr6 (298-351)||(25170746-25170799)
[»] chr4 (3 HSPs)
chr4 (298-387)||(27383280-27383370)
chr4 (298-387)||(44973635-44973725)
chr4 (49-93)||(41982597-41982642)
[»] chr3 (4 HSPs)
chr3 (132-218)||(35909069-35909154)
chr3 (128-218)||(35933248-35933344)
chr3 (128-252)||(35913462-35913585)
chr3 (298-387)||(5126974-5127063)
[»] chr2 (2 HSPs)
chr2 (297-405)||(40151081-40151190)
chr2 (298-387)||(32607650-32607740)
[»] chr8 (1 HSPs)
chr8 (50-93)||(33136959-33137003)


Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 23108237 - 23108506
Alignment:
Q  1 tcaacaatcaaattgatccttgatactgacgttaaaaactaaaagaattgttatttattaccttttacattttgaaatgaagtttcatgcatgaattatt 100  Q
    ||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  23108237 tcaacaatcaaattgatccctgatagtgatgttaaaaactaaaagaattgttatttattacctttta-attttgaaatgaagtttcatgcatgaattatt 23108335  T
Q  101 ataaaaatctaactattagatgtcccatcaaggaagtaaatttgaaacatggaccatgcttagaaactcattaatttgatggtgagttaggacgcaaact 200  Q
    ||||||||| || ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| ||||||||||||    
T  23108336 ataaaaatcgaattattagatgtcccatcaaggaagtaaatttgaaacatggacctagcttagaaactcattaatttgatggtgagtcaggacgcaaact 23108435  T
Q  201 tccatagatgaatgatgagataactgtcaaggctcgttcaagttgctagcttaggaactttatgcttatgg 271  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||    
T  23108436 tccatagatgaatgatgagataactgtcgaggctcattcaagttgctagcttaggaactctatgcttatgg 23108506  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 251 - 346
Target Start/End: Original strand, 32840070 - 32840165
Alignment:
Q  251 ttaggaactttatgcttatggcttatatatgcacctagtttagttgcttttggctatgtaatattaaagaactttcttttataacttatgacttat 346  Q
    |||||||||||||||||||| ||||| ||  | | ||| | |||||||||||||||||||||||| |||||| | ||||||| | |||||| ||||    
T  32840070 ttaggaactttatgcttatgacttatttaaccccttagctgagttgcttttggctatgtaatatttaagaacctacttttatgatttatgatttat 32840165  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 304 - 387
Target Start/End: Complemental strand, 46867023 - 46866939
Alignment:
Q  304 ctatgtaatattaaagaactttcttttataacttatgacttattaatgtc-catagttaggttgtttttggatatgtaatatttc 387  Q
    |||||||||||| |||||| | ||| ||| ||||||||||| |||||| | | ||||| ||||| |||||  |||||||||||||    
T  46867023 ctatgtaatatttaagaacatccttctatgacttatgacttgttaatgccacgtagtttggttgcttttgcctatgtaatatttc 46866939  T

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Target: chr1 (Bit Score: 135; Significance: 4e-70; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 128 - 443
Target Start/End: Complemental strand, 38517984 - 38517675
Alignment:
Q  128 tcaaggaagtaaatttgaaacatggaccatgcttagaaactcattaatttgatggtgagttaggacgcaaacttccatagatgaatgatgagataactgt 227  Q
    ||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||  ||||  |||||||||||||| |||||||||||| ||  |    
T  38517984 tcaaggaagtaaatttgaatcacggaccatgcttagaaacccattaatttgatggtgaggcaggagacaaacttccatagaggaatgatgagatcacact 38517885  T
Q  228 caaggctcgttcaagttgctagcttaggaactttatgcttatggc---ttatatatgcacctagtttagttgcttttggctatgtaatattaaagaactt 324  Q
    |||  ||| |||| |||||||||||||||||||  ||||||| ||   |||| ||||| | |||||  |||| ||||||||||||||||||||| |||||    
T  38517884 caaaactcattcaggttgctagcttaggaacttcttgcttatagcttattatttatgcccttagttgggttgtttttggctatgtaatattaaa-aactt 38517786  T
Q  325 tcttttataacttatgacttattaatgtccatagttaggttgtttttggatatgtaatatttctgcagttgttttgcaatggttgcctataagtttatgt 424  Q
    ||||        ||||||||||||||| |||||||| ||||| |||| ||||| ||||||||||||| |||||||||||||||||||| |||||||||||    
T  38517785 tctt-------gtatgacttattaatgcccatagtttggttgcttttagatatttaatatttctgcacttgttttgcaatggttgcct-taagtttatgt 38517694  T
Q  425 tcaccattatgactttatt 443  Q
     ||||||||||||||||||    
T  38517693 acaccattatgactttatt 38517675  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 38518075 - 38518012
Alignment:
Q  8 tcaaattgatccttgatactgacgttaaaaactaaaagaattgttatttatta-ccttttacat 70  Q
    |||||||||||| ||||| ||| ||||| |||||||||||||||||||||||| ||||||||||    
T  38518075 tcaaattgatccctgatattgatgttaagaactaaaagaattgttatttattacccttttacat 38518012  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 298 - 387
Target Start/End: Original strand, 51545859 - 51545949
Alignment:
Q  298 ttttggctatgtaatattaaagaactttcttttataacttatgacttattaatgtcc--atagttaggttgtttttggatatgtaatatttc 387  Q
    |||||||||||||||||| ||||||  || ||||| ||||||||||| |||||| ||  |||||| ||||| |||||  |||||||||||||    
T  51545859 ttttggctatgtaatatttaagaac-atcctttatgacttatgacttgttaatgcccaaatagttgggttgcttttgcctatgtaatatttc 51545949  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 387
Target Start/End: Original strand, 43869841 - 43869930
Alignment:
Q  298 ttttggctatgtaatattaaagaactttcttttataacttatgacttattaatgtcc-atagttaggttgtttttggatatgtaatatttc 387  Q
    |||||||||||||||||| |||||| | ||| ||| ||||||||||| |||||| ||  ||||| ||||| |||||  |||||||||||||    
T  43869841 ttttggctatgtaatatt-aagaacatccttctatgacttatgacttgttaatgccctgtagtttggttgcttttgcctatgtaatatttc 43869930  T

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Target: chr6 (Bit Score: 134; Significance: 1e-69; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 31 - 442
Target Start/End: Original strand, 2558596 - 2559020
Alignment:
Q  31 gttaaaaactaaaagaattgttatttattaccttttacat-tttgaaatgaagtttcatgcatgaattattataaaaatctaactattagatgtccca-- 127  Q
    ||||||||| |||| |||||||||| |||| ||||||||| |||||| ||||||||||| ||||||||||||||| |||||||||| ||||| |  ||      
T  2558596 gttaaaaacgaaaaaaattgttattgattatcttttacatgtttgaattgaagtttcatccatgaattattataacaatctaactaatagattttgcaca 2558695  T
Q  128 ---------tcaaggaagtaaatttgaaacatggaccatgcttagaaactcattaatttgatggtgagttaggacgcaaacttccatagatgaatgatga 218  Q
             | |||||||||||||||||||||| | ||||||||||||| |||||||||| |||||||  |||| ||||||||||| ||| ||| || ||    
T  2558696 aagtgcatttgaaggaagtaaatttgaaacatgcatcatgcttagaaacccattaatttgttggtgaggcaggaagcaaacttccaaagaggaacgacga 2558795  T
Q  219 gataactgtcaaggctcgttcaagttgctagcttaggaactttatgcttatggcttatatatgcaccta--gtttagttgcttttggctatgtaatatta 316  Q
    ||| || ||||| |||  ||||||| | ||||||||||| ||| |||||||||||||| ||| | | ||  |||  ||||||||| |||| |||||||||    
T  2558796 gatcaccgtcaaagctaattcaagtcgttagcttaggaaatttttgcttatggcttatttatac-cttattgttgggttgcttttagctacgtaatatta 2558894  T
Q  317 aagaactttcttttataacttatgacttattaatgtccatagttaggttgtttttggatatgtaatatttctgcagttg-ttttgcaatggttgcctata 415  Q
    |||||||| |||||||||||| ||||||| |||||||||||||| ||||||||||||||||| | |||||| ||| ||| ||||||  ||||| ||| ||    
T  2558895 aagaacttccttttataacttttgacttactaatgtccatagttgggttgtttttggatatgcattatttccgcacttgtttttgcggtggttacct-ta 2558993  T
Q  416 agtttatgttcaccattatgactttat 442  Q
    |||||| || ||| |||||||||||||    
T  2558994 agtttaggtccactattatgactttat 2559020  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 298 - 351
Target Start/End: Complemental strand, 25170799 - 25170746
Alignment:
Q  298 ttttggctatgtaatattaaagaactttcttttataacttatgacttattaatg 351  Q
    |||||||||||||||||| |||||| | ||||||| ||||||||||| ||||||    
T  25170799 ttttggctatgtaatatttaagaacatccttttatgacttatgacttgttaatg 25170746  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 298 - 387
Target Start/End: Original strand, 27383280 - 27383370
Alignment:
Q  298 ttttggctatgtaatattaaagaactttcttttataacttatgacttattaatg-tccatagttaggttgtttttggatatgtaatatttc 387  Q
    |||||||||||||||||| |||||| | ||| ||||||||||||||| ||||||  |||||||| ||||| |||||  |||||||||||||    
T  27383280 ttttggctatgtaatatttaagaacatccttctataacttatgacttgttaatgccccatagtttggttgcttttgtctatgtaatatttc 27383370  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 387
Target Start/End: Original strand, 44973635 - 44973725
Alignment:
Q  298 ttttggctatgtaatattaaagaactttcttttataacttatgacttattaatgtc-catagttaggttgtttttggatatgtaatatttc 387  Q
    |||||||||||||||||| |||||| | ||| ||| ||||||||||| |||||| | |  |||| ||||| |||||  |||||||||||||    
T  44973635 ttttggctatgtaatatttaagaacatccttctatgacttatgacttgttaatgccgcggagtttggttgattttgcctatgtaatatttc 44973725  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 93
Target Start/End: Complemental strand, 41982642 - 41982597
Alignment:
Q  49 tgttatttattaccttttacat-tttgaaatgaagtttcatgcatg 93  Q
    |||||||||||||||||||||| |||||||| ||||||||| ||||    
T  41982642 tgttatttattaccttttacatgtttgaaattaagtttcattcatg 41982597  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 132 - 218
Target Start/End: Original strand, 35909069 - 35909154
Alignment:
Q  132 ggaagtaaatttgaaacatggaccatgcttagaaactcattaatttgatggtgagttaggacgcaaacttccatagatgaatgatga 218  Q
    |||||||||||||||||| ||| ||||||||||| |  ||||||||||||||||  ||||| ||| ||||||||||| |||||||||    
T  35909069 ggaagtaaatttgaaacaaggatcatgcttagaacca-attaatttgatggtgaactaggaagcagacttccatagaggaatgatga 35909154  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 128 - 218
Target Start/End: Original strand, 35933248 - 35933344
Alignment:
Q  128 tcaaggaagtaaatttgaaacatggaccatgcttaga------aactcattaatttgatggtgagttaggacgcaaacttccatagatgaatgatga 218  Q
    ||||||||||||| |||||||||||| ||||||||||      ||| ||||| |||||||||||  ||||| ||| ||||||||||| |||||||||    
T  35933248 tcaaggaagtaaaattgaaacatggagcatgcttagaagttagaacccattattttgatggtgaagtaggaagcagacttccatagaggaatgatga 35933344  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 128 - 252
Target Start/End: Original strand, 35913462 - 35913585
Alignment:
Q  128 tcaaggaagtaaatttgaaacatggaccatgcttagaaactcattaatttgatggtgagttaggacgcaaacttccatagatgaatgatgagataactgt 227  Q
    ||||||||||||||||||||||| || |||||| || ||| | |||||||||||||||   |||| |||   ||||||| | |||||||||||| |  ||    
T  35913462 tcaaggaagtaaatttgaaacattgatcatgctcag-aaccctttaatttgatggtgaagcaggaggcaggattccatataggaatgatgagatcaaagt 35913560  T
Q  228 caaggctcgttcaagttgctagctt 252  Q
    ||| || |||||| ||||| |||||    
T  35913561 caaagcacgttcaggttgccagctt 35913585  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 387
Target Start/End: Original strand, 5126974 - 5127063
Alignment:
Q  298 ttttggctatgtaatattaaagaactttcttttataacttatgacttattaatgtcc-atagttaggttgtttttggatatgtaatatttc 387  Q
    |||||||||||||||||| |||||| | ||| ||| ||||||||||| |||||| ||  ||||| ||||| |||||  |||||||||||||    
T  5126974 ttttggctatgtaatatt-aagaacatccttctatgacttatgacttgttaatgccctgtagtttggttgcttttgcctatgtaatatttc 5127063  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 297 - 405
Target Start/End: Complemental strand, 40151190 - 40151081
Alignment:
Q  297 cttttggctatgtaatattaaagaactttcttttataacttatgacttattaatgtcc-atagttaggttgtttttggatatgtaatatttctgcagttg 395  Q
    ||||||||||||||||||| |||| | | ||| ||| |||||||| || |||||| || |||||| ||||| |||| | ||||||||||| ||||| |||    
T  40151190 cttttggctatgtaatatttaagagcctccttctatgacttatgatttgttaatgccctatagttgggttgattttcgctatgtaatattcctgcaattg 40151091  T
Q  396 ttttgcaatg 405  Q
    |  |||||||    
T  40151090 tagtgcaatg 40151081  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 298 - 387
Target Start/End: Complemental strand, 32607740 - 32607650
Alignment:
Q  298 ttttggctatgtaatattaaagaactttcttttataacttatgacttattaatgtcc--atagttaggttgtttttggatatgtaatatttc 387  Q
    |||||||||||||||||| |||||| | | | ||| ||||||||||| |||||| ||  |||||| ||||| |||||  |||||||||||||    
T  32607740 ttttggctatgtaatatttaagaacatac-tctatgacttatgacttgttaatgccccaatagttgggttgcttttgcctatgtaatatttc 32607650  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 93
Target Start/End: Original strand, 33136959 - 33137003
Alignment:
Q  50 gttatttattaccttttacat-tttgaaatgaagtttcatgcatg 93  Q
    ||||||||||||||||| ||| |||||||||||||||||| ||||    
T  33136959 gttatttattaccttttgcatatttgaaatgaagtttcatccatg 33137003  T

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