View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18901_low_6 (Length: 457)

Name: NF18901_low_6
Description: NF18901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18901_low_6
NF18901_low_6
[»] chr1 (19 HSPs)
chr1 (130-443)||(38517675-38517982)
chr1 (31-111)||(22456496-22456576)
chr1 (31-111)||(8435398-8435478)
chr1 (31-111)||(22447952-22448032)
chr1 (31-111)||(22453186-22453266)
chr1 (31-111)||(49148060-49148140)
chr1 (22-112)||(34066506-34066595)
chr1 (31-110)||(17618865-17618944)
chr1 (59-112)||(14159092-14159146)
chr1 (31-110)||(3087507-3087585)
chr1 (31-106)||(23990138-23990212)
chr1 (20-112)||(28138600-28138692)
chr1 (33-112)||(28141863-28141942)
chr1 (33-111)||(25662860-25662938)
chr1 (22-79)||(34732100-34732157)
chr1 (298-387)||(51545859-51545949)
chr1 (298-387)||(43869841-43869930)
chr1 (29-70)||(2405831-2405872)
chr1 (33-112)||(21911049-21911128)
[»] chr7 (16 HSPs)
chr7 (130-271)||(23108365-23108506)
chr7 (1-112)||(23108150-23108261)
chr7 (22-112)||(22083193-22083283)
chr7 (22-112)||(23313254-23313344)
chr7 (22-103)||(24423205-24423286)
chr7 (59-112)||(26808524-26808577)
chr7 (251-346)||(32840070-32840165)
chr7 (33-112)||(1636702-1636781)
chr7 (33-112)||(5189465-5189544)
chr7 (33-112)||(44672797-44672876)
chr7 (59-112)||(20436931-20436985)
chr7 (30-71)||(1960306-1960347)
chr7 (59-112)||(1633482-1633536)
chr7 (59-97)||(5241963-5242001)
chr7 (18-70)||(10345483-10345535)
chr7 (304-387)||(46866939-46867023)
[»] chr6 (25 HSPs)
chr6 (130-442)||(2558707-2559020)
chr6 (31-111)||(16731608-16731688)
chr6 (31-112)||(28118111-28118192)
chr6 (31-111)||(12980496-12980576)
chr6 (33-110)||(11183841-11183918)
chr6 (31-112)||(15578674-15578755)
chr6 (31-112)||(20527164-20527245)
chr6 (31-111)||(9313545-9313625)
chr6 (31-111)||(12983383-12983463)
chr6 (31-111)||(20189189-20189269)
chr6 (31-111)||(22146722-22146802)
chr6 (21-112)||(2773154-2773245)
chr6 (46-112)||(16883837-16883903)
chr6 (22-97)||(6514283-6514356)
chr6 (31-97)||(14281289-14281353)
chr6 (31-97)||(28111576-28111640)
chr6 (29-85)||(13005492-13005546)
chr6 (298-351)||(25170746-25170799)
chr6 (33-112)||(965025-965104)
chr6 (31-93)||(28107524-28107584)
chr6 (22-95)||(5260099-5260170)
chr6 (75-112)||(12747090-12747127)
chr6 (75-112)||(28894281-28894318)
chr6 (30-70)||(10290296-10290336)
chr6 (30-70)||(17106391-17106431)
[»] chr3 (12 HSPs)
chr3 (33-112)||(50096941-50097020)
chr3 (22-112)||(9155086-9155176)
chr3 (31-112)||(9158268-9158349)
chr3 (136-218)||(35909073-35909154)
chr3 (33-112)||(10557812-10557891)
chr3 (31-109)||(18551950-18552028)
chr3 (59-112)||(19194006-19194060)
chr3 (59-112)||(26273320-26273373)
chr3 (30-70)||(10902345-10902385)
chr3 (298-387)||(5126974-5127063)
chr3 (31-76)||(25260985-25261030)
chr3 (22-70)||(41977406-41977454)
[»] scaffold0134 (1 HSPs)
scaffold0134 (22-112)||(7515-7605)
[»] chr5 (11 HSPs)
chr5 (31-112)||(17944899-17944980)
chr5 (31-112)||(13423287-13423368)
chr5 (65-112)||(35432275-35432322)
chr5 (59-112)||(43103690-43103744)
chr5 (31-95)||(18239276-18239340)
chr5 (33-112)||(22036124-22036203)
chr5 (59-112)||(36700726-36700780)
chr5 (33-112)||(22039350-22039429)
chr5 (31-108)||(36357021-36357099)
chr5 (29-70)||(28787091-28787132)
chr5 (75-112)||(33320725-33320762)
[»] chr4 (19 HSPs)
chr4 (22-111)||(7394621-7394710)
chr4 (31-110)||(24605007-24605086)
chr4 (22-110)||(26703235-26703323)
chr4 (22-96)||(2436966-2437040)
chr4 (298-387)||(27383280-27383370)
chr4 (22-96)||(19859265-19859337)
chr4 (33-111)||(54900044-54900122)
chr4 (31-97)||(53094796-53094862)
chr4 (22-70)||(19821024-19821072)
chr4 (31-70)||(49270993-49271032)
chr4 (298-387)||(44973635-44973725)
chr4 (27-69)||(48415284-48415326)
chr4 (22-85)||(26060801-26060861)
chr4 (75-112)||(37176918-37176955)
chr4 (22-71)||(56195836-56195885)
chr4 (59-102)||(22884195-22884239)
chr4 (59-102)||(22935859-22935903)
chr4 (31-71)||(40795321-40795361)
chr4 (23-71)||(56199163-56199211)
[»] chr2 (12 HSPs)
chr2 (31-112)||(30720053-30720134)
chr2 (33-112)||(16881559-16881638)
chr2 (33-112)||(17039249-17039328)
chr2 (33-112)||(35077182-35077261)
chr2 (33-112)||(35080440-35080519)
chr2 (297-405)||(40151081-40151190)
chr2 (31-70)||(25138701-25138740)
chr2 (31-70)||(43724002-43724041)
chr2 (22-88)||(5666805-5666867)
chr2 (26-70)||(15470760-15470804)
chr2 (19-71)||(31427302-31427354)
chr2 (298-387)||(32607650-32607740)
[»] chr8 (16 HSPs)
chr8 (31-110)||(44008452-44008531)
chr8 (31-112)||(41778746-41778826)
chr8 (20-112)||(13097187-13097278)
chr8 (22-112)||(12820639-12820730)
chr8 (31-112)||(587591-587672)
chr8 (31-112)||(626250-626331)
chr8 (15-112)||(5952392-5952489)
chr8 (31-112)||(27805367-27805449)
chr8 (30-94)||(45155039-45155101)
chr8 (33-112)||(2847590-2847669)
chr8 (19-92)||(37681279-37681350)
chr8 (33-112)||(33383626-33383705)
chr8 (23-70)||(5538535-5538582)
chr8 (31-97)||(36710408-36710472)
chr8 (75-112)||(5828308-5828345)
chr8 (32-108)||(12104222-12104298)
[»] scaffold0884 (1 HSPs)
scaffold0884 (33-112)||(4299-4378)
[»] scaffold0996 (1 HSPs)
scaffold0996 (31-97)||(1691-1755)
[»] scaffold0012 (1 HSPs)
scaffold0012 (59-112)||(157363-157417)
[»] scaffold2047 (1 HSPs)
scaffold2047 (59-111)||(570-623)
[»] scaffold1657 (1 HSPs)
scaffold1657 (31-112)||(234-315)
[»] scaffold0043 (2 HSPs)
scaffold0043 (75-112)||(13873-13910)
scaffold0043 (75-112)||(11530-11567)
[»] scaffold2073 (1 HSPs)
scaffold2073 (30-97)||(635-700)
[»] scaffold0146 (1 HSPs)
scaffold0146 (59-112)||(36105-36159)
[»] scaffold0045 (1 HSPs)
scaffold0045 (75-112)||(90344-90381)


Alignment Details
Target: chr1 (Bit Score: 129; Significance: 1e-66; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 130 - 443
Target Start/End: Complemental strand, 38517982 - 38517675
Alignment:
Q  130 aaggatgtaaatttgaaacatggaccatgcttagaaactcattaatttgatggtgagttaggacgcaaacttccatagatgaatgatgagataactgtca 229  Q
    ||||| ||||||||||| || ||||||||||||||||| ||||||||||||||||||  ||||  |||||||||||||| |||||||||||| ||  |||    
T  38517982 aaggaagtaaatttgaatcacggaccatgcttagaaacccattaatttgatggtgaggcaggagacaaacttccatagaggaatgatgagatcacactca 38517883  T
Q  230 aggctcgttcaagttgctagcttaggaactttatgcttatggc---ttatatatgcacctagtttagttgcttttggctatgtaatattaaagaactttc 326  Q
    |  ||| |||| |||||||||||||||||||  ||||||| ||   |||| ||||| | |||||  |||| ||||||||||||||||||||| |||||||    
T  38517882 aaactcattcaggttgctagcttaggaacttcttgcttatagcttattatttatgcccttagttgggttgtttttggctatgtaatattaaa-aactttc 38517784  T
Q  327 ttttataacttatgacttattaatgtccatagttaggttgtttttggatatgtaatatttctgcagttgttttgcaatggttgcctataagtttatgttc 426  Q
    ||        ||||||||||||||| |||||||| ||||| |||| ||||| ||||||||||||| |||||||||||||||||||| ||||||||||| |    
T  38517783 tt-------gtatgacttattaatgcccatagtttggttgcttttagatatttaatatttctgcacttgttttgcaatggttgcct-taagtttatgtac 38517692  T
Q  427 accattatgactttatt 443  Q
    |||||||||||||||||    
T  38517691 accattatgactttatt 38517675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 31 - 111
Target Start/End: Original strand, 22456496 - 22456576
Alignment:
Q  31 ttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggactgtttcaatttctactc 111  Q
    ||||||||||||||||||||||| ||  ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  22456496 ttttagcaagtgtactaaaaataaatcgaagtaataaaatttataagttcgtatccacagggactgtttcaatttctactc 22456576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 31 - 111
Target Start/End: Complemental strand, 8435478 - 8435398
Alignment:
Q  31 ttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggactgtttcaatttctactc 111  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||| ||| ||| |||||||||||||||||||||    
T  8435478 ttttagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgcatccacatggactgtttcaatttctactc 8435398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 31 - 111
Target Start/End: Original strand, 22447952 - 22448032
Alignment:
Q  31 ttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggactgtttcaatttctactc 111  Q
    ||||||||||||||||||||||| ||  |||||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  22447952 ttttagcaagtgtactaaaaataaatcgaagtaataaaatttataagttcatatccacagggactgtttcaatttctactc 22448032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 31 - 111
Target Start/End: Original strand, 22453186 - 22453266
Alignment:
Q  31 ttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggactgtttcaatttctactc 111  Q
    ||||||||||||||||||||||| ||  |||||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  22453186 ttttagcaagtgtactaaaaataaatcgaagtaataaaatttataagttcatatccacagggactgtttcaatttctactc 22453266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 31 - 111
Target Start/End: Complemental strand, 49148140 - 49148060
Alignment:
Q  31 ttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggactgtttcaatttctactc 111  Q
    |||||| |||||||||||||||| ||  ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  49148140 ttttagtaagtgtactaaaaataaatcgaagtaataaaatttataagttcgtatccacagggactgtttcaatttctactc 49148060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 22 - 112
Target Start/End: Complemental strand, 34066595 - 34066506
Alignment:
Q  22 ttgatatatttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggactgtttcaatttctactcg 112  Q
    |||||| | |||||| ||||||||||||| |||||  ||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  34066595 ttgataaacttttagtaagtgtactaaaa-tatatcgaagtaataaaatttataagttcgtatccacagggactgtttcaatttctactcg 34066506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 31 - 110
Target Start/End: Original strand, 17618865 - 17618944
Alignment:
Q  31 ttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggactgtttcaatttctact 110  Q
    ||||||||| ||||||||||||||||  |||||||||||||||||||||| |||  ||||||||||||||||||||||||    
T  17618865 ttttagcaaatgtactaaaaatatatcgaagtaataaaatttataagttcatattcacagggactgtttcaatttctact 17618944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 59 - 112
Target Start/End: Original strand, 14159092 - 14159146
Alignment:
Q  59 aagtaataaaatttataag-ttcgtatctacagggactgtttcaatttctactcg 112  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  14159092 aagtaataaaatttataagattcgtatctacagggactgtttcaacttctactcg 14159146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 31 - 110
Target Start/End: Original strand, 3087507 - 3087585
Alignment:
Q  31 ttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggactgtttcaatttctact 110  Q
    ||||| |||||||||||||| |||||  ||||||||||||||||||||| |||||  |||| ||||||| ||||||||||    
T  3087507 ttttaacaagtgtactaaaa-tatatcgaagtaataaaatttataagtttgtatccgcaggaactgttttaatttctact 3087585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 31 - 106
Target Start/End: Original strand, 23990138 - 23990212
Alignment:
Q  31 ttttagcaagtgtactaaaaa-tatatttaagtaataaaatttataagttcgtatctacagggactgtttcaatttc 106  Q
    ||||||||||||||||||||| |||||  ||||||| |||||||||||||||||||  |||| ||| ||||||||||    
T  23990138 ttttagcaagtgtactaaaaaatatatcgaagtaatcaaatttataagttcgtatc--caggaactatttcaatttc 23990212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 112
Target Start/End: Original strand, 28138600 - 28138692
Alignment:
Q  20 tgttgatatatttttagcaagtgtactaaaaatatatttaagtaataaaatttataag-ttcgtatctacagggactgtttcaatttctactcg 112  Q
    |||||||| ||  ||||||||||||||||   |||||  ||||||||||||||||||| ||||| || |||||||||||||||| |||||||||    
T  28138600 tgttgatagataattagcaagtgtactaact-tatatcgaagtaataaaatttataagattcgtttccacagggactgtttcaacttctactcg 28138692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 33 - 112
Target Start/End: Original strand, 28141863 - 28141942
Alignment:
Q  33 ttagcaagtgtactaaaaatatatttaagtaataaaatttataag-ttcgtatctacagggactgtttcaatttctactcg 112  Q
    ||||||||||||||||   |||||  ||||||||||||||||||| ||||| || |||||||||||||||| |||||||||    
T  28141863 ttagcaagtgtactaact-tatatcgaagtaataaaatttataagattcgtttccacagggactgtttcaacttctactcg 28141942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 33 - 111
Target Start/End: Original strand, 25662860 - 25662938
Alignment:
Q  33 ttagcaagtgtactaaaaatatatttaagtaataaaatttataag-ttcgtatctacagggactgtttcaatttctactc 111  Q
    ||||||||||||||||   |||||  ||||||||||||||||||| |||||||| ||| |||||||||||| ||||||||    
T  25662860 ttagcaagtgtactaact-tatatcgaagtaataaaatttataagattcgtatccacatggactgtttcaacttctactc 25662938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 22 - 79
Target Start/End: Original strand, 34732100 - 34732157
Alignment:
Q  22 ttgatatatttttagcaagtgtactaaaaatatatttaagtaataaaatttataagtt 79  Q
    |||||| ||||||||||||||||||||||||  |   |||||||||||||||||||||    
T  34732100 ttgataaatttttagcaagtgtactaaaaatgaaccgaagtaataaaatttataagtt 34732157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 298 - 387
Target Start/End: Original strand, 51545859 - 51545949
Alignment:
Q  298 ttttggctatgtaatattaaagaactttcttttataacttatgacttattaatgtcc--atagttaggttgtttttggatatgtaatatttc 387  Q
    |||||||||||||||||| ||||||  || ||||| ||||||||||| |||||| ||  |||||| ||||| |||||  |||||||||||||    
T  51545859 ttttggctatgtaatatttaagaac-atcctttatgacttatgacttgttaatgcccaaatagttgggttgcttttgcctatgtaatatttc 51545949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 387
Target Start/End: Original strand, 43869841 - 43869930
Alignment:
Q  298 ttttggctatgtaatattaaagaactttcttttataacttatgacttattaatgtcc-atagttaggttgtttttggatatgtaatatttc 387  Q
    |||||||||||||||||| |||||| | ||| ||| ||||||||||| |||||| ||  ||||| ||||| |||||  |||||||||||||    
T  43869841 ttttggctatgtaatatt-aagaacatccttctatgacttatgacttgttaatgccctgtagtttggttgcttttgcctatgtaatatttc 43869930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 70
Target Start/End: Complemental strand, 2405872 - 2405831
Alignment:
Q  29 atttttagcaagtgtactaaaaatatatttaagtaataaaat 70  Q
    |||||||||||||||||||||||| |||  ||||||||||||    
T  2405872 atttttagcaagtgtactaaaaatgtatcgaagtaataaaat 2405831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 112
Target Start/End: Original strand, 21911049 - 21911128
Alignment:
Q  33 ttagcaagtgtactaaaaatatatttaagtaataaaatttataag-ttcgtatctacagggactgtttcaatttctactcg 112  Q
    ||||||||||||||||   |||||  ||| |||||||||| |||| |||||||| ||| |||||||||||| |||||||||    
T  21911049 ttagcaagtgtactaact-tatatcgaagaaataaaatttgtaagattcgtatccacatggactgtttcaacttctactcg 21911128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 114; Significance: 1e-57; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 130 - 271
Target Start/End: Original strand, 23108365 - 23108506
Alignment:
Q  130 aaggatgtaaatttgaaacatggaccatgcttagaaactcattaatttgatggtgagttaggacgcaaacttccatagatgaatgatgagataactgtca 229  Q
    ||||| ||||||||||||||||||||  |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||     
T  23108365 aaggaagtaaatttgaaacatggacctagcttagaaactcattaatttgatggtgagtcaggacgcaaacttccatagatgaatgatgagataactgtcg 23108464  T
Q  230 aggctcgttcaagttgctagcttaggaactttatgcttatgg 271  Q
    |||||| ||||||||||||||||||||||| |||||||||||    
T  23108465 aggctcattcaagttgctagcttaggaactctatgcttatgg 23108506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 23108261 - 23108150
Alignment:
Q  1 tatcaaggatcaatttgattgttgatatatttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggactgtttc 100  Q
    ||||| ||||||||||||||||||||| | ||||||||| ||||||||||||||||  ||||||||||||||||||||| |||| |||| ||||||||||    
T  23108261 tatcagggatcaatttgattgttgatacacttttagcaactgtactaaaaatatatcaaagtaataaaatttataagtttgtatttacatggactgtttc 23108162  T
Q  101 aatttctactcg 112  Q
    ||||||||||||    
T  23108161 aatttctactcg 23108150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 22 - 112
Target Start/End: Original strand, 22083193 - 22083283
Alignment:
Q  22 ttgatatatttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggactgtttcaatttctactcg 112  Q
    |||||| | |||||||||||||||||||| |||||  ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  22083193 ttgatagacttttagcaagtgtactaaaattatatcgaagcaataaaatttataagttcgtatccacagggactgtttcaatttctactcg 22083283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 22 - 112
Target Start/End: Original strand, 23313254 - 23313344
Alignment:
Q  22 ttgatatatttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggactgtttcaatttctactcg 112  Q
    |||||| | ||||||||||||||||||||||||||  || ||||||||||||||||||| |||| ||||||||||||||||||||||||||    
T  23313254 ttgatagacttttagcaagtgtactaaaaatatatcgaaataataaaatttataagttcatatccacagggactgtttcaatttctactcg 23313344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 22 - 103
Target Start/End: Original strand, 24423205 - 24423286
Alignment:
Q  22 ttgatatatttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggactgtttcaat 103  Q
    |||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||| || ||| | | |||||||||    
T  24423205 ttgatatacttttagcaagtgtactaaaaatacattgaagtaataaaatttataagttcgtctccacatgaattgtttcaat 24423286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 59 - 112
Target Start/End: Original strand, 26808524 - 26808577
Alignment:
Q  59 aagtaataaaatttataagttcgtatctacagggactgtttcaatttctactcg 112  Q
    |||||||||| |||||||||||||||| |||| |||||||||||||||||||||    
T  26808524 aagtaataaattttataagttcgtatccacagagactgtttcaatttctactcg 26808577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 251 - 346
Target Start/End: Original strand, 32840070 - 32840165
Alignment:
Q  251 ttaggaactttatgcttatggcttatatatgcacctagtttagttgcttttggctatgtaatattaaagaactttcttttataacttatgacttat 346  Q
    |||||||||||||||||||| ||||| ||  | | ||| | |||||||||||||||||||||||| |||||| | ||||||| | |||||| ||||    
T  32840070 ttaggaactttatgcttatgacttatttaaccccttagctgagttgcttttggctatgtaatatttaagaacctacttttatgatttatgatttat 32840165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 33 - 112
Target Start/End: Original strand, 1636702 - 1636781
Alignment:
Q  33 ttagcaagtgtactaaaaatatatttaagtaataaaatttataag-ttcgtatctacagggactgtttcaatttctactcg 112  Q
    ||||||||||||||||   |||||  ||||||||||||||||||| ||||| || |||||||||||||||| |||||||||    
T  1636702 ttagcaagtgtactaact-tatatcgaagtaataaaatttataagattcgtttccacagggactgtttcaacttctactcg 1636781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 33 - 112
Target Start/End: Original strand, 5189465 - 5189544
Alignment:
Q  33 ttagcaagtgtactaaaaatatatttaagtaataaaatttataag-ttcgtatctacagggactgtttcaatttctactcg 112  Q
    ||||||||||||||||   |||||  |||||||||| |||||||| |||||||| |||||||||||||||| |||||||||    
T  5189465 ttagcaagtgtactaact-tatatcgaagtaataaactttataagattcgtatccacagggactgtttcaacttctactcg 5189544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 33 - 112
Target Start/End: Original strand, 44672797 - 44672876
Alignment:
Q  33 ttagcaagtgtactaaaaatatatttaagtaataaaatttataag-ttcgtatctacagggactgtttcaatttctactcg 112  Q
    ||||||||||||||||   |||||  ||||||||||||||||||| ||||| || |||||||||||||||| |||||||||    
T  44672797 ttagcaagtgtactaact-tatatcgaagtaataaaatttataagattcgtttccacagggactgtttcaacttctactcg 44672876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 59 - 112
Target Start/End: Complemental strand, 20436985 - 20436931
Alignment:
Q  59 aagtaataaaatttataag-ttcgtatctacagggactgtttcaatttctactcg 112  Q
    ||||||||||||||||||  |||||||| |||| |||||||||||||||||||||    
T  20436985 aagtaataaaatttataacattcgtatccacagagactgtttcaatttctactcg 20436931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 1960347 - 1960306
Alignment:
Q  30 tttttagcaagtgtactaaaaatatatttaagtaataaaatt 71  Q
    |||||||||||||||||||||||||||  |||||||||||||    
T  1960347 tttttagcaagtgtactaaaaatatatcaaagtaataaaatt 1960306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 112
Target Start/End: Original strand, 1633482 - 1633536
Alignment:
Q  59 aagtaataaaatttataag-ttcgtatctacagggactgtttcaatttctactcg 112  Q
    ||||||||||||||||||| ||||| || | |||||||||||||| |||||||||    
T  1633482 aagtaataaaatttataagattcgtttccaaagggactgtttcaacttctactcg 1633536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 97
Target Start/End: Original strand, 5241963 - 5242001
Alignment:
Q  59 aagtaataaaatttataagttcgtatctacagggactgt 97  Q
    ||||||||||||||||||||| ||||| |||||||||||    
T  5241963 aagtaataaaatttataagtttgtatccacagggactgt 5242001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 10345535 - 10345483
Alignment:
Q  18 attgttgatatatttttagcaagtgtactaaaaatatatttaagtaataaaat 70  Q
    |||| ||||| | |||||||||||||||||||||| |||  ||||||||||||    
T  10345535 attgctgatagaattttagcaagtgtactaaaaatgtatcgaagtaataaaat 10345483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 304 - 387
Target Start/End: Complemental strand, 46867023 - 46866939
Alignment:
Q  304 ctatgtaatattaaagaactttcttttataacttatgacttattaatgtc-catagttaggttgtttttggatatgtaatatttc 387  Q
    |||||||||||| |||||| | ||| ||| ||||||||||| |||||| | | ||||| ||||| |||||  |||||||||||||    
T  46867023 ctatgtaatatttaagaacatccttctatgacttatgacttgttaatgccacgtagtttggttgcttttgcctatgtaatatttc 46866939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 113; Significance: 5e-57; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 130 - 442
Target Start/End: Original strand, 2558707 - 2559020
Alignment:
Q  130 aaggatgtaaatttgaaacatggaccatgcttagaaactcattaatttgatggtgagttaggacgcaaacttccatagatgaatgatgagataactgtca 229  Q
    ||||| |||||||||||||||| | ||||||||||||| |||||||||| |||||||  |||| ||||||||||| ||| ||| || ||||| || ||||    
T  2558707 aaggaagtaaatttgaaacatgcatcatgcttagaaacccattaatttgttggtgaggcaggaagcaaacttccaaagaggaacgacgagatcaccgtca 2558806  T
Q  230 aggctcgttcaagttgctagcttaggaactttatgcttatggcttatatatgcaccta--gtttagttgcttttggctatgtaatattaaagaactttct 327  Q
    | |||  ||||||| | ||||||||||| ||| |||||||||||||| ||| | | ||  |||  ||||||||| |||| ||||||||||||||||| ||    
T  2558807 aagctaattcaagtcgttagcttaggaaatttttgcttatggcttatttatac-cttattgttgggttgcttttagctacgtaatattaaagaacttcct 2558905  T
Q  328 tttataacttatgacttattaatgtccatagttaggttgtttttggatatgtaatatttctgcagttg-ttttgcaatggttgcctataagtttatgttc 426  Q
    |||||||||| ||||||| |||||||||||||| ||||||||||||||||| | |||||| ||| ||| ||||||  ||||| ||| |||||||| || |    
T  2558906 tttataacttttgacttactaatgtccatagttgggttgtttttggatatgcattatttccgcacttgtttttgcggtggttacct-taagtttaggtcc 2559004  T
Q  427 accattatgactttat 442  Q
    || |||||||||||||    
T  2559005 actattatgactttat 2559020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 31 - 111
Target Start/End: Complemental strand, 16731688 - 16731608
Alignment:
Q  31 ttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggactgtttcaatttctactc 111  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  16731688 ttttagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacagggactgtttcaatttctactc 16731608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 31 - 112
Target Start/End: Complemental strand, 28118192 - 28118111
Alignment:
Q  31 ttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggactgtttcaatttctactcg 112  Q
    |||||||||||||| |||||||||||  ||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  28118192 ttttagcaagtgtattaaaaatatatcgaagtaataaaatttataagttcgtatccacagggactgtttcaatttctactcg 28118111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 31 - 111
Target Start/End: Original strand, 12980496 - 12980576
Alignment:
Q  31 ttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggactgtttcaatttctactc 111  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  12980496 ttttagcaagtgtactaaaaataaattgaagtaataaaatttataagttcgtatccacatggactgtttcaatttctactc 12980576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 33 - 110
Target Start/End: Original strand, 11183841 - 11183918
Alignment:
Q  33 ttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggactgtttcaatttctact 110  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  11183841 ttagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcatatccacagggactgtttcaatttctact 11183918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 31 - 112
Target Start/End: Original strand, 15578674 - 15578755
Alignment:
Q  31 ttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggactgtttcaatttctactcg 112  Q
    |||||||||||||| |||||||||||  ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  15578674 ttttagcaagtgtattaaaaatatatcgaaggaataaaatttataagttcgtatctacagggactatttcaatttctactcg 15578755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 31 - 112
Target Start/End: Original strand, 20527164 - 20527245
Alignment:
Q  31 ttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggactgtttcaatttctactcg 112  Q
    ||||||||||||||||| ||||||||  ||||||||||||||||||||||||||| |||||||||||||| |||||||||||    
T  20527164 ttttagcaagtgtactacaaatatatcgaagtaataaaatttataagttcgtatccacagggactgtttcgatttctactcg 20527245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 31 - 111
Target Start/End: Original strand, 9313545 - 9313625
Alignment:
Q  31 ttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggactgtttcaatttctactc 111  Q
    ||||| ||||||||||||||||||||  ||||||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  9313545 ttttaacaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacaaggactgtttcaatttctactc 9313625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 31 - 111
Target Start/End: Original strand, 12983383 - 12983463
Alignment:
Q  31 ttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggactgtttcaatttctactc 111  Q
    ||||||||||||||||||||||| ||  ||||||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  12983383 ttttagcaagtgtactaaaaataaatcgaagtaataaaatttataagttcgtatccacaggggctgtttcaatttctactc 12983463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 31 - 111
Target Start/End: Original strand, 20189189 - 20189269
Alignment:
Q  31 ttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggactgtttcaatttctactc 111  Q
    |||||||||||||| |||||||||||  ||||||||||||||||||||||||||||| ||  ||||||||||||| |||||    
T  20189189 ttttagcaagtgtattaaaaatatatcgaagtaataaaatttataagttcgtatctatagaaactgtttcaatttatactc 20189269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 31 - 111
Target Start/End: Complemental strand, 22146802 - 22146722
Alignment:
Q  31 ttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggactgtttcaatttctactc 111  Q
    |||||||||||||| |||||||||||  ||||||||||||||||||||||||||||| ||  ||||||||||||| |||||    
T  22146802 ttttagcaagtgtattaaaaatatatcgaagtaataaaatttataagttcgtatctatagaaactgtttcaatttatactc 22146722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 21 - 112
Target Start/End: Original strand, 2773154 - 2773245
Alignment:
Q  21 gttgatatatttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggactgtttcaatttctactcg 112  Q
    ||||||| | ||||||||||||||||||||||  ||  |||||||| |||||||||||||||||| || |||| ||||||||||||||||||    
T  2773154 gttgatagacttttagcaagtgtactaaaaatgaatcgaagtaatataatttataagttcgtatccactgggattgtttcaatttctactcg 2773245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 46 - 112
Target Start/End: Complemental strand, 16883903 - 16883837
Alignment:
Q  46 taaaaatatatttaagtaataaaatttataagttcgtatctacagggactgtttcaatttctactcg 112  Q
    |||||||||||  |||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  16883903 taaaaatatatcgaagtaataaaatttataagttcgtatccgcagggactgtttcaatttctactcg 16883837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 22 - 97
Target Start/End: Complemental strand, 6514356 - 6514283
Alignment:
Q  22 ttgatatatttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggactgt 97  Q
    |||||| | |||||||||||||||||||| |||    ||||||||||||||||||||||||||||||| |||||||    
T  6514356 ttgatagacttttagcaagtgtactaaaactatcg--aagtaataaaatttataagttcgtatctacaaggactgt 6514283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 31 - 97
Target Start/End: Original strand, 14281289 - 14281353
Alignment:
Q  31 ttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggactgt 97  Q
    |||||||||||||||||||| ||||   ||||||||||||||||||||| ||||| |||| ||||||    
T  14281289 ttttagcaagtgtactaaaactatag--aagtaataaaatttataagtttgtatccacagagactgt 14281353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 31 - 97
Target Start/End: Original strand, 28111576 - 28111640
Alignment:
Q  31 ttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggactgt 97  Q
    |||||||||||||||||||| |||    ||||||||||||||||||||||||||| ||| |||||||    
T  28111576 ttttagcaagtgtactaaaactatcg--aagtaataaaatttataagttcgtatccacatggactgt 28111640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 29 - 85
Target Start/End: Complemental strand, 13005546 - 13005492
Alignment:
Q  29 atttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatc 85  Q
    |||||||||||||||||||||| |||    |||||||||||||||||||||||||||    
T  13005546 atttttagcaagtgtactaaaactatcg--aagtaataaaatttataagttcgtatc 13005492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 298 - 351
Target Start/End: Complemental strand, 25170799 - 25170746
Alignment:
Q  298 ttttggctatgtaatattaaagaactttcttttataacttatgacttattaatg 351  Q
    |||||||||||||||||| |||||| | ||||||| ||||||||||| ||||||    
T  25170799 ttttggctatgtaatatttaagaacatccttttatgacttatgacttgttaatg 25170746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 112
Target Start/End: Complemental strand, 965104 - 965025
Alignment:
Q  33 ttagcaagtgtactaaaaatatatttaagtaataaaatttataag-ttcgtatctacagggactgtttcaatttctactcg 112  Q
    ||||||||||||||||   |||||  ||||||||||||||||||  |||||||  |||||||||||||||| |||||||||    
T  965104 ttagcaagtgtactaact-tatatcgaagtaataaaatttataaaattcgtattcacagggactgtttcaacttctactcg 965025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 93
Target Start/End: Original strand, 28107524 - 28107584
Alignment:
Q  31 ttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacaggga 93  Q
    ||||| |||||||||||||| |||    ||||||||||||||||||||||||||| |||||||    
T  28107524 ttttaacaagtgtactaaaactatcg--aagtaataaaatttataagttcgtatccacaggga 28107584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 95
Target Start/End: Complemental strand, 5260170 - 5260099
Alignment:
Q  22 ttgatatatttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggact 95  Q
    |||||| | ||||||||| |||||||||| |||    ||||||||||||||||||||||||||| ||| |||||    
T  5260170 ttgatagacttttagcaaatgtactaaaactatcg--aagtaataaaatttataagttcgtatccacaaggact 5260099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 112
Target Start/End: Complemental strand, 12747127 - 12747090
Alignment:
Q  75 aagttcgtatctacagggactgtttcaatttctactcg 112  Q
    ||||||||||| ||| ||||||||||||||||||||||    
T  12747127 aagttcgtatccacaaggactgtttcaatttctactcg 12747090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 112
Target Start/End: Original strand, 28894281 - 28894318
Alignment:
Q  75 aagttcgtatctacagggactgtttcaatttctactcg 112  Q
    ||||||||||| ||| ||||||||||||||||||||||    
T  28894281 aagttcgtatccacatggactgtttcaatttctactcg 28894318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 70
Target Start/End: Complemental strand, 10290336 - 10290296
Alignment:
Q  30 tttttagcaagtgtactaaaaatatatttaagtaataaaat 70  Q
    ||||||||||||||||||||||| |||  ||||||||||||    
T  10290336 tttttagcaagtgtactaaaaatgtatcgaagtaataaaat 10290296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 17106391 - 17106431
Alignment:
Q  30 tttttagcaagtgtactaaaaatatatttaagtaataaaat 70  Q
    ||||||||||||||||||||||| |||  ||||||||||||    
T  17106391 tttttagcaagtgtactaaaaatgtatcgaagtaataaaat 17106431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 3e-30; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 33 - 112
Target Start/End: Complemental strand, 50097020 - 50096941
Alignment:
Q  33 ttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggactgtttcaatttctactcg 112  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  50097020 ttagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacagggactgtttcaatttctactcg 50096941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 22 - 112
Target Start/End: Complemental strand, 9155176 - 9155086
Alignment:
Q  22 ttgatatatttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggactgtttcaatttctactcg 112  Q
    |||||| | ||||||||||||||||||||||| ||  || |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  9155176 ttgataaacttttagcaagtgtactaaaaataaatcgaaataataaaatttataagttcgtatccacagggactgtttcaatttctactcg 9155086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 31 - 112
Target Start/End: Complemental strand, 9158349 - 9158268
Alignment:
Q  31 ttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggactgtttcaatttctactcg 112  Q
    ||||||||||||||||||||||| ||  ||||||||||||||||||||  |||| |||||||||||||||||||||||||||    
T  9158349 ttttagcaagtgtactaaaaataaatcgaagtaataaaatttataagtatgtatttacagggactgtttcaatttctactcg 9158268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 136 - 218
Target Start/End: Original strand, 35909073 - 35909154
Alignment:
Q  136 gtaaatttgaaacatggaccatgcttagaaactcattaatttgatggtgagttaggacgcaaacttccatagatgaatgatga 218  Q
    |||||||||||||| ||| ||||||||||| |  ||||||||||||||||  ||||| ||| ||||||||||| |||||||||    
T  35909073 gtaaatttgaaacaaggatcatgcttagaacca-attaatttgatggtgaactaggaagcagacttccatagaggaatgatga 35909154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 33 - 112
Target Start/End: Original strand, 10557812 - 10557891
Alignment:
Q  33 ttagcaagtgtactaaaaatatatttaagtaataaaatttataag-ttcgtatctacagggactgtttcaatttctactcg 112  Q
    ||||||||||||||||   |||||  ||||||||||||||||||| ||||| || |||||||||||||||| |||||||||    
T  10557812 ttagcaagtgtactaact-tatatcgaagtaataaaatttataagattcgtttccacagggactgtttcaacttctactcg 10557891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 31 - 109
Target Start/End: Complemental strand, 18552028 - 18551950
Alignment:
Q  31 ttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggactgtttcaatttctac 109  Q
    |||||||||||||| ||||||   ||| ||||||||||||| | ||||||||||| ||  ||||||||| |||||||||    
T  18552028 ttttagcaagtgtaataaaaaagaattgaagtaataaaattcacaagttcgtatcaactaggactgttttaatttctac 18551950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 59 - 112
Target Start/End: Complemental strand, 19194060 - 19194006
Alignment:
Q  59 aagtaataaaatttataag-ttcgtatctacagggactgtttcaatttctactcg 112  Q
    ||||||||||||||||||| |||||||| ||| ||||||||||||| ||||||||    
T  19194060 aagtaataaaatttataagattcgtatccacaaggactgtttcaatatctactcg 19194006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 59 - 112
Target Start/End: Complemental strand, 26273373 - 26273320
Alignment:
Q  59 aagtaataaaatttataagttcgtatctacagggactgtttcaatttctactcg 112  Q
    |||||||||||||||||||||||| |||||| ||| ||||| || |||||||||    
T  26273373 aagtaataaaatttataagttcgtctctacaaggattgtttaaacttctactcg 26273320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 30 - 70
Target Start/End: Complemental strand, 10902385 - 10902345
Alignment:
Q  30 tttttagcaagtgtactaaaaatatatttaagtaataaaat 70  Q
    ||||||||||||||||||||||| ||| |||||||||||||    
T  10902385 tttttagcaagtgtactaaaaatgtatctaagtaataaaat 10902345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 387
Target Start/End: Original strand, 5126974 - 5127063
Alignment:
Q  298 ttttggctatgtaatattaaagaactttcttttataacttatgacttattaatgtcc-atagttaggttgtttttggatatgtaatatttc 387  Q
    |||||||||||||||||| |||||| | ||| ||| ||||||||||| |||||| ||  ||||| ||||| |||||  |||||||||||||    
T  5126974 ttttggctatgtaatatt-aagaacatccttctatgacttatgacttgttaatgccctgtagtttggttgcttttgcctatgtaatatttc 5127063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 76
Target Start/End: Complemental strand, 25261030 - 25260985
Alignment:
Q  31 ttttagcaagtgtactaaaaatatatttaagtaataaaatttataa 76  Q
    ||||||||||||||||||||||  ||  ||||||||||||||||||    
T  25261030 ttttagcaagtgtactaaaaatgcatcaaagtaataaaatttataa 25260985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 41977454 - 41977406
Alignment:
Q  22 ttgatatatttttagcaagtgtactaaaaatatatttaagtaataaaat 70  Q
    |||||| |||||||||||||||| ||||||| |||  ||||||||||||    
T  41977454 ttgatagatttttagcaagtgtattaaaaatgtatcgaagtaataaaat 41977406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 22 - 112
Target Start/End: Complemental strand, 7605 - 7515
Alignment:
Q  22 ttgatatatttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggactgtttcaatttctactcg 112  Q
    |||||| | ||||||||||||||||||||||||||  ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  7605 ttgataaacttttagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacaaggactgtttcaatttctactcg 7515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 5e-29; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 31 - 112
Target Start/End: Complemental strand, 17944980 - 17944899
Alignment:
Q  31 ttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggactgtttcaatttctactcg 112  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||||||| |||| |||||||||||||||||||||    
T  17944980 ttttagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacagagactgtttcaatttctactcg 17944899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 31 - 112
Target Start/End: Original strand, 13423287 - 13423368
Alignment:
Q  31 ttttagcaagtgtactaaaaatatatttaagtaataaaatttataag-ttcgtatctacagggactgtttcaatttctactcg 112  Q
    |||||| ||||||||||||  |||||| ||||||||||||||||||| ||||||||||||  ||||||||||| |||||||||    
T  13423287 ttttagtaagtgtactaaac-tatattgaagtaataaaatttataagattcgtatctacaaagactgtttcaacttctactcg 13423368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 65 - 112
Target Start/End: Original strand, 35432275 - 35432322
Alignment:
Q  65 taaaatttataagttcgtatctacagggactgtttcaatttctactcg 112  Q
    ||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  35432275 taaaatttataagttcgtatccacagggactgtttcaatttttactcg 35432322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 59 - 112
Target Start/End: Original strand, 43103690 - 43103744
Alignment:
Q  59 aagtaataaaatttataag-ttcgtatctacagggactgtttcaatttctactcg 112  Q
    ||||||||||||||||||| |||||||||| |||||||||||||| |||||||||    
T  43103690 aagtaataaaatttataagattcgtatctatagggactgtttcaacttctactcg 43103744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 31 - 95
Target Start/End: Original strand, 18239276 - 18239340
Alignment:
Q  31 ttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggact 95  Q
    |||||||||||||| |||||||  ||  ||||||||||||||||||||||||||| ||| |||||    
T  18239276 ttttagcaagtgtattaaaaatgaatcgaagtaataaaatttataagttcgtatccacatggact 18239340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 33 - 112
Target Start/End: Complemental strand, 22036203 - 22036124
Alignment:
Q  33 ttagcaagtgtactaaaaatatatttaagtaataaaatttataag-ttcgtatctacagggactgtttcaatttctactcg 112  Q
    ||||||||||||||||   |||||  ||||||||||||||||||| ||||| || |||||||||||||||| |||||||||    
T  22036203 ttagcaagtgtactaact-tatatcgaagtaataaaatttataagattcgtttccacagggactgtttcaacttctactcg 22036124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 59 - 112
Target Start/End: Complemental strand, 36700780 - 36700726
Alignment:
Q  59 aagtaataaaatttataag-ttcgtatctacagggactgtttcaatttctactcg 112  Q
    ||||||||||||||||||| ||| |||| |||||||||||||||| |||||||||    
T  36700780 aagtaataaaatttataagattcatatccacagggactgtttcaacttctactcg 36700726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 112
Target Start/End: Complemental strand, 22039429 - 22039350
Alignment:
Q  33 ttagcaagtgtactaaaaatatatttaagtaataaaatttataag-ttcgtatctacagggactgtttcaatttctactcg 112  Q
    ||||||||||||||||   |||||  ||||||||||||||||||| ||||| || | |||||||||||||| |||||||||    
T  22039429 ttagcaagtgtactaact-tatatcgaagtaataaaatttataagattcgtttccatagggactgtttcaacttctactcg 22039350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 108
Target Start/End: Complemental strand, 36357099 - 36357021
Alignment:
Q  31 ttttagcaagtgtactaaaaatatatttaagtaataaaatttataag-ttcgtatctacagggactgtttcaatttcta 108  Q
    ||||| ||||||||||||||||  ||  ||||||||| ||||||||| ||||| || ||| |||| |||||||||||||    
T  36357099 ttttaacaagtgtactaaaaatgcatcgaagtaataatatttataagattcgtctccacatggaccgtttcaatttcta 36357021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 70
Target Start/End: Original strand, 28787091 - 28787132
Alignment:
Q  29 atttttagcaagtgtactaaaaatatatttaagtaataaaat 70  Q
    |||||||||||||||||||||||| |||  ||||||||||||    
T  28787091 atttttagcaagtgtactaaaaatgtatcgaagtaataaaat 28787132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 112
Target Start/End: Original strand, 33320725 - 33320762
Alignment:
Q  75 aagttcgtatctacagggactgtttcaatttctactcg 112  Q
    ||||||||||| |||||||||| |||||||||||||||    
T  33320725 aagttcgtatccacagggactgcttcaatttctactcg 33320762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 22 - 111
Target Start/End: Original strand, 7394621 - 7394710
Alignment:
Q  22 ttgatatatttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggactgtttcaatttctactc 111  Q
    |||||| | |||||||||||||||||||| |||||  ||||||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  7394621 ttgataaacttttagcaagtgtactaaaagtatatcgaagtaataaaatttataagttcgtatccacatggactgtttcaatttctactc 7394710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 31 - 110
Target Start/End: Original strand, 24605007 - 24605086
Alignment:
Q  31 ttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggactgtttcaatttctact 110  Q
    ||||||||||||||||||||||||||  |||||||||||| |||||||||||||| ||| ||||||||||||||||||||    
T  24605007 ttttagcaagtgtactaaaaatatatcgaagtaataaaatctataagttcgtatccacaaggactgtttcaatttctact 24605086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 22 - 110
Target Start/End: Original strand, 26703235 - 26703323
Alignment:
Q  22 ttgatatatttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggactgtttcaatttctact 110  Q
    |||||| | ||||||||||| ||||||||||  ||  |||||||||||||||||| |||||||||||||| || |||||||||||||||    
T  26703235 ttgatagacttttagcaagtatactaaaaatgcatcaaagtaataaaatttataacttcgtatctacaggaaccgtttcaatttctact 26703323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 22 - 96
Target Start/End: Complemental strand, 2437040 - 2436966
Alignment:
Q  22 ttgatatatttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggactg 96  Q
    |||||| |||||||| || ||||||||||||||||  |||||||||||||||||||||| |||| ||| ||||||    
T  2437040 ttgataaatttttagtaaatgtactaaaaatatatcgaagtaataaaatttataagttcatatccacaaggactg 2436966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 298 - 387
Target Start/End: Original strand, 27383280 - 27383370
Alignment:
Q  298 ttttggctatgtaatattaaagaactttcttttataacttatgacttattaatg-tccatagttaggttgtttttggatatgtaatatttc 387  Q
    |||||||||||||||||| |||||| | ||| ||||||||||||||| ||||||  |||||||| ||||| |||||  |||||||||||||    
T  27383280 ttttggctatgtaatatttaagaacatccttctataacttatgacttgttaatgccccatagtttggttgcttttgtctatgtaatatttc 27383370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 22 - 96
Target Start/End: Original strand, 19859265 - 19859337
Alignment:
Q  22 ttgatatatttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggactg 96  Q
    |||||| | ||||| |||||||||||||| ||||   ||||||||||||||||||||||||||| | ||||||||    
T  19859265 ttgatagacttttaacaagtgtactaaaactatag--aagtaataaaatttataagttcgtatccaaagggactg 19859337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 33 - 111
Target Start/End: Complemental strand, 54900122 - 54900044
Alignment:
Q  33 ttagcaagtgtactaaaaatatatttaagtaataaaatttataag-ttcgtatctacagggactgtttcaatttctactc 111  Q
    ||||||||||||||||   |||||  ||||||||||||||||||| |||||||| ||| |||||||||||| ||||||||    
T  54900122 ttagcaagtgtactaact-tatatcgaagtaataaaatttataagattcgtatccacatggactgtttcaacttctactc 54900044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 31 - 97
Target Start/End: Complemental strand, 53094862 - 53094796
Alignment:
Q  31 ttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggactgt 97  Q
    |||||||||||||| || ||||  ||  |||||||||| |||||||||||||||| |||||||||||    
T  53094862 ttttagcaagtgtattataaatgaatcgaagtaataaactttataagttcgtatccacagggactgt 53094796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 19821072 - 19821024
Alignment:
Q  22 ttgatatatttttagcaagtgtactaaaaatatatttaagtaataaaat 70  Q
    |||||||| |||||||||||||||||||||| |||  ||||||||||||    
T  19821072 ttgatatacttttagcaagtgtactaaaaatgtatcgaagtaataaaat 19821024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 70
Target Start/End: Complemental strand, 49271032 - 49270993
Alignment:
Q  31 ttttagcaagtgtactaaaaatatatttaagtaataaaat 70  Q
    |||||| |||||||||||||||||||| ||||||||||||    
T  49271032 ttttagtaagtgtactaaaaatatattgaagtaataaaat 49270993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 387
Target Start/End: Original strand, 44973635 - 44973725
Alignment:
Q  298 ttttggctatgtaatattaaagaactttcttttataacttatgacttattaatgtc-catagttaggttgtttttggatatgtaatatttc 387  Q
    |||||||||||||||||| |||||| | ||| ||| ||||||||||| |||||| | |  |||| ||||| |||||  |||||||||||||    
T  44973635 ttttggctatgtaatatttaagaacatccttctatgacttatgacttgttaatgccgcggagtttggttgattttgcctatgtaatatttc 44973725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 69
Target Start/End: Original strand, 48415284 - 48415326
Alignment:
Q  27 atatttttagcaagtgtactaaaaatatatttaagtaataaaa 69  Q
    ||||||||||||||||||||||||| ||||  |||||||||||    
T  48415284 atatttttagcaagtgtactaaaaacatatcgaagtaataaaa 48415326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 85
Target Start/End: Complemental strand, 26060861 - 26060801
Alignment:
Q  22 ttgatatatttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatc 85  Q
    |||||| | |||||||||||||||||||||| |||  |||||||||||   |||||||||||||    
T  26060861 ttgatagacttttagcaagtgtactaaaaatgtatcgaagtaataaaa---ataagttcgtatc 26060801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 112
Target Start/End: Complemental strand, 37176955 - 37176918
Alignment:
Q  75 aagttcgtatctacagggactgtttcaatttctactcg 112  Q
    ||||||||||| ||| ||||||||||||||||||||||    
T  37176955 aagttcgtatccacaaggactgtttcaatttctactcg 37176918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 71
Target Start/End: Complemental strand, 56195885 - 56195836
Alignment:
Q  22 ttgatatatttttagcaagtgtactaaaaatatatttaagtaataaaatt 71  Q
    |||||| ||||||||||||||||||||||||  ||  |||||||||||||    
T  56195885 ttgatagatttttagcaagtgtactaaaaatgcatcgaagtaataaaatt 56195836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 102
Target Start/End: Original strand, 22884195 - 22884239
Alignment:
Q  59 aagtaataaaatttataag-ttcgtatctacagggactgtttcaa 102  Q
    ||||||||||||||||||| |||||||| |||| |||||||||||    
T  22884195 aagtaataaaatttataagattcgtatccacagtgactgtttcaa 22884239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 102
Target Start/End: Original strand, 22935859 - 22935903
Alignment:
Q  59 aagtaataaaatttataag-ttcgtatctacagggactgtttcaa 102  Q
    ||||||||||||||||||| |||||||| |||| |||||||||||    
T  22935859 aagtaataaaatttataagattcgtatccacagtgactgtttcaa 22935903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 71
Target Start/End: Complemental strand, 40795361 - 40795321
Alignment:
Q  31 ttttagcaagtgtactaaaaatatatttaagtaataaaatt 71  Q
    |||||||||||||||||||||| |||  |||||||||||||    
T  40795361 ttttagcaagtgtactaaaaatgtatcgaagtaataaaatt 40795321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 56199211 - 56199163
Alignment:
Q  23 tgatatatttttagcaagtgtactaaaaatatatttaagtaataaaatt 71  Q
    ||||| ||||||||||||||||||||||||  ||  |||||||||||||    
T  56199211 tgatagatttttagcaagtgtactaaaaatgcatcgaagtaataaaatt 56199163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 31 - 112
Target Start/End: Complemental strand, 30720134 - 30720053
Alignment:
Q  31 ttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggactgtttcaatttctactcg 112  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||| ||||| |||||| |||||||||||||||||||    
T  30720134 ttttagcaagtgtactaaaaatatatcgaagtaataaaatttataagtttgtatccacaggggctgtttcaatttctactcg 30720053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 33 - 112
Target Start/End: Complemental strand, 16881638 - 16881559
Alignment:
Q  33 ttagcaagtgtactaaaaatatatttaagtaataaaatttataag-ttcgtatctacagggactgtttcaatttctactcg 112  Q
    ||||||||||||||||   |||||  ||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||    
T  16881638 ttagcaagtgtactaact-tatatcgaagtaataaaatttataagattcgtatttacagggactgtttcaacttctactcg 16881559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 33 - 112
Target Start/End: Complemental strand, 17039328 - 17039249
Alignment:
Q  33 ttagcaagtgtactaaaaatatatttaagtaataaaatttataag-ttcgtatctacagggactgtttcaatttctactcg 112  Q
    ||||||||||||||||   |||||  ||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||    
T  17039328 ttagcaagtgtactaact-tatatcgaagtaataaaatttataagattcgtatttacagggactgtttcaacttctactcg 17039249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 33 - 112
Target Start/End: Complemental strand, 35077261 - 35077182
Alignment:
Q  33 ttagcaagtgtactaaaaatatatttaagtaataaaatttataag-ttcgtatctacagggactgtttcaatttctactcg 112  Q
    ||||||||||||||||   |||||  ||||||||||||||||||| ||||| || |||||||||||||||| |||||||||    
T  35077261 ttagcaagtgtactaact-tatatcgaagtaataaaatttataagattcgtttccacagggactgtttcaacttctactcg 35077182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 33 - 112
Target Start/End: Complemental strand, 35080519 - 35080440
Alignment:
Q  33 ttagcaagtgtactaaaaatatatttaagtaataaaatttataag-ttcgtatctacagggactgtttcaatttctactcg 112  Q
    ||||||||||||||||   |||||  ||||||||||||||||||| ||||| || |||||||||||||||| |||||||||    
T  35080519 ttagcaagtgtactaact-tatatcgaagtaataaaatttataagattcgtttccacagggactgtttcaacttctactcg 35080440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 297 - 405
Target Start/End: Complemental strand, 40151190 - 40151081
Alignment:
Q  297 cttttggctatgtaatattaaagaactttcttttataacttatgacttattaatgtcc-atagttaggttgtttttggatatgtaatatttctgcagttg 395  Q
    ||||||||||||||||||| |||| | | ||| ||| |||||||| || |||||| || |||||| ||||| |||| | ||||||||||| ||||| |||    
T  40151190 cttttggctatgtaatatttaagagcctccttctatgacttatgatttgttaatgccctatagttgggttgattttcgctatgtaatattcctgcaattg 40151091  T
Q  396 ttttgcaatg 405  Q
    |  |||||||    
T  40151090 tagtgcaatg 40151081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 70
Target Start/End: Original strand, 25138701 - 25138740
Alignment:
Q  31 ttttagcaagtgtactaaaaatatatttaagtaataaaat 70  Q
    ||||||||||||||||||||||||||  ||||||||||||    
T  25138701 ttttagcaagtgtactaaaaatatatcgaagtaataaaat 25138740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 70
Target Start/End: Complemental strand, 43724041 - 43724002
Alignment:
Q  31 ttttagcaagtgtactaaaaatatatttaagtaataaaat 70  Q
    ||||||||||||||||||||||||||  ||||||||||||    
T  43724041 ttttagcaagtgtactaaaaatatatcgaagtaataaaat 43724002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 88
Target Start/End: Complemental strand, 5666867 - 5666805
Alignment:
Q  22 ttgatatatttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctac 88  Q
    |||||| | |||||||||||||| |||||||||||  ||||||||||    ||||||||||||||||    
T  5666867 ttgatagacttttagcaagtgtattaaaaatatatcgaagtaataaa----ataagttcgtatctac 5666805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 15470804 - 15470760
Alignment:
Q  26 tatatttttagcaagtgtactaaaaatatatttaagtaataaaat 70  Q
    ||||||||||||||| ||||||||||| |||  ||||||||||||    
T  15470804 tatatttttagcaagggtactaaaaatgtatcgaagtaataaaat 15470760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 31427302 - 31427354
Alignment:
Q  19 ttgttgatatatttttagcaagtgtactaaaaatatatttaagtaataaaatt 71  Q
    ||||||||| | ||||||||||||||||||||||  ||  |||||||||||||    
T  31427302 ttgttgatagacttttagcaagtgtactaaaaatgcatcgaagtaataaaatt 31427354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 298 - 387
Target Start/End: Complemental strand, 32607740 - 32607650
Alignment:
Q  298 ttttggctatgtaatattaaagaactttcttttataacttatgacttattaatgtcc--atagttaggttgtttttggatatgtaatatttc 387  Q
    |||||||||||||||||| |||||| | | | ||| ||||||||||| |||||| ||  |||||| ||||| |||||  |||||||||||||    
T  32607740 ttttggctatgtaatatttaagaacatac-tctatgacttatgacttgttaatgccccaatagttgggttgcttttgcctatgtaatatttc 32607650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 31 - 110
Target Start/End: Complemental strand, 44008531 - 44008452
Alignment:
Q  31 ttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggactgtttcaatttctact 110  Q
    ||||| ||||||||||||||||||||  |||||||||||||||||||||||||| |||| ||||||||||||||||||||    
T  44008531 ttttaacaagtgtactaaaaatatatcaaagtaataaaatttataagttcgtatttacatggactgtttcaatttctact 44008452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 31 - 112
Target Start/End: Original strand, 41778746 - 41778826
Alignment:
Q  31 ttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggactgtttcaatttctactcg 112  Q
    ||||||||| ||||||||||||||||  |||||||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  41778746 ttttagcaactgtactaaaaatatatcgaagtaataaaatttataagttcgtat-tacaaggactgtttcaatttctactcg 41778826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 20 - 112
Target Start/End: Complemental strand, 13097278 - 13097187
Alignment:
Q  20 tgttgatatatttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggactgtttcaatttctactcg 112  Q
    |||||||| | ||||||||||||||||||||||||||  |||||||||||||||| |||||||||  ||||||||| ||||||||||||||||    
T  13097278 tgttgataaacttttagcaagtgtactaaaaatatatcgaagtaataaaatttat-agttcgtattcacagggactatttcaatttctactcg 13097187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 22 - 112
Target Start/End: Original strand, 12820639 - 12820730
Alignment:
Q  22 ttgatatatttttagcaagtgtactaaaaatatatttaagtaataaaatttat-aagttcgtatctacagggactgtttcaatttctactcg 112  Q
    |||||| | ||||||||||||| ||||||||||||  |||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||    
T  12820639 ttgataaacttttagcaagtgtgctaaaaatatatcgaagtaataaaatttataaagttcgtatccacatggactgtttcaatttctactcg 12820730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 31 - 112
Target Start/End: Complemental strand, 587672 - 587591
Alignment:
Q  31 ttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggactgtttcaatttctactcg 112  Q
    ||||| |||||||| ||||||||||   |||||||||||||||||||||||||||  || ||||||||||||||||||||||    
T  587672 ttttaacaagtgtattaaaaatataacgaagtaataaaatttataagttcgtatccgcatggactgtttcaatttctactcg 587591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 31 - 112
Target Start/End: Original strand, 626250 - 626331
Alignment:
Q  31 ttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggactgtttcaatttctactcg 112  Q
    ||||| |||||||| ||||||||||   |||||||||||||||||||||||||||  || ||||||||||||||||||||||    
T  626250 ttttaacaagtgtattaaaaatataacgaagtaataaaatttataagttcgtatccgcatggactgtttcaatttctactcg 626331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 15 - 112
Target Start/End: Complemental strand, 5952489 - 5952392
Alignment:
Q  15 ttgattgttgatatatttttagcaagtgtactaaaaatatatttaagtaataaaatttataag-ttcgtatctacagggactgtttcaatttctactcg 112  Q
    |||||| |||||| ||  ||||||||||||||||   |||||  ||||||||||||||||||| |||||||| ||| |||||||||||| |||||||||    
T  5952489 ttgatttttgatacataattagcaagtgtactaact-tatatcgaagtaataaaatttataagattcgtatccacaaggactgtttcaacttctactcg 5952392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 31 - 112
Target Start/End: Original strand, 27805367 - 27805449
Alignment:
Q  31 ttttagcaagtgtactaaaaatatatttaagtaataaaatttataag-ttcgtatctacagggactgtttcaatttctactcg 112  Q
    ||||||||||||||||||||||  ||  || |||||||||||||||| ||||| |  ||||||| ||||||||||||||||||    
T  27805367 ttttagcaagtgtactaaaaatgcatcaaaataataaaatttataagattcgtcttcacagggattgtttcaatttctactcg 27805449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 30 - 94
Target Start/End: Original strand, 45155039 - 45155101
Alignment:
Q  30 tttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggac 94  Q
    ||||||||||||||||||||| |||    ||||||||||||||||||||||||||| ||||||||    
T  45155039 tttttagcaagtgtactaaaactatcg--aagtaataaaatttataagttcgtatccacagggac 45155101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 33 - 112
Target Start/End: Original strand, 2847590 - 2847669
Alignment:
Q  33 ttagcaagtgtactaaaaatatatttaagtaataaaatttataag-ttcgtatctacagggactgtttcaatttctactcg 112  Q
    ||||||||||||||||   |||||  ||||||||| ||||||||| |||||||| |||||||||||||||| |||||||||    
T  2847590 ttagcaagtgtactaact-tatatcgaagtaataacatttataagattcgtatccacagggactgtttcaacttctactcg 2847669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 92
Target Start/End: Original strand, 37681279 - 37681350
Alignment:
Q  19 ttgttgatatatttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacaggg 92  Q
    ||||||||| | |||||||||||||||||| |||||    ||||||||||||||||||||| ||||| ||||||    
T  37681279 ttgttgatagacttttagcaagtgtactaataatatcg--aagtaataaaatttataagtttgtatccacaggg 37681350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 112
Target Start/End: Complemental strand, 33383705 - 33383626
Alignment:
Q  33 ttagcaagtgtactaaaaatatatttaagtaataaaatttataag-ttcgtatctacagggactgtttcaatttctactcg 112  Q
    ||||||||||||||||   |||||  ||||||||| ||||||||| |||||||| ||| |||||||||||| |||||||||    
T  33383705 ttagcaagtgtactaact-tatatggaagtaataatatttataagattcgtatccacaaggactgtttcaacttctactcg 33383626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 5538535 - 5538582
Alignment:
Q  23 tgatatatttttagcaagtgtactaaaaatatatttaagtaataaaat 70  Q
    ||||| |||||||||||||||||||||||| |||  ||||||||||||    
T  5538535 tgatagatttttagcaagtgtactaaaaatgtatcgaagtaataaaat 5538582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 97
Target Start/End: Original strand, 36710408 - 36710472
Alignment:
Q  31 ttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggactgt 97  Q
    |||||||||||||||||| | |||    |||||||||| |||||||||||||||| |||||||||||    
T  36710408 ttttagcaagtgtactaagactatca--aagtaataaagtttataagttcgtatccacagggactgt 36710472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 112
Target Start/End: Complemental strand, 5828345 - 5828308
Alignment:
Q  75 aagttcgtatctacagggactgtttcaatttctactcg 112  Q
    ||||||||||| ||| ||||||||||||||||||||||    
T  5828345 aagttcgtatccacatggactgtttcaatttctactcg 5828308  T

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Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 108
Target Start/End: Original strand, 12104222 - 12104298
Alignment:
Q  32 tttagcaagtgtactaaaaatatatttaagtaataaaatttataag-ttcgtatctacagggactgtttcaatttcta 108  Q
    |||||||||||| |||||  |||||  ||||||||||||||||||| || ||||| | |||||||||||||| |||||    
T  12104222 tttagcaagtgtgctaaac-tatatcgaagtaataaaatttataagatttgtatccatagggactgtttcaacttcta 12104298  T

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Target: scaffold0884 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0884
Description:

Target: scaffold0884; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 33 - 112
Target Start/End: Original strand, 4299 - 4378
Alignment:
Q  33 ttagcaagtgtactaaaaatatatttaagtaataaaatttataag-ttcgtatctacagggactgtttcaatttctactcg 112  Q
    ||||||||||||||||   |||||  ||||||||||||||||||| |||||||  |||||||||||||||| |||||||||    
T  4299 ttagcaagtgtactaact-tatatcgaagtaataaaatttataagattcgtattcacagggactgtttcaacttctactcg 4378  T

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Target: scaffold0996 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0996
Description:

Target: scaffold0996; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 31 - 97
Target Start/End: Original strand, 1691 - 1755
Alignment:
Q  31 ttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggactgt 97  Q
    |||||||||||||||||||| |||    ||||||||||||||||||||||||||| ||| |||||||    
T  1691 ttttagcaagtgtactaaaactatcg--aagtaataaaatttataagttcgtatccacaaggactgt 1755  T

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Target: scaffold0012 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 59 - 112
Target Start/End: Complemental strand, 157417 - 157363
Alignment:
Q  59 aagtaataaaatttataag-ttcgtatctacagggactgtttcaatttctactcg 112  Q
    ||||||||||||||||||| |||| |||||| ||||||||||||| |||||||||    
T  157417 aagtaataaaatttataagattcgaatctacggggactgtttcaacttctactcg 157363  T

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Target: scaffold2047 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold2047
Description:

Target: scaffold2047; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 570 - 623
Alignment:
Q  59 aagtaataaaatttataag-ttcgtatctacagggactgtttcaatttctactc 111  Q
    ||||||||||||||||||| |||||||| ||||||| |||||||| ||||||||    
T  570 aagtaataaaatttataagattcgtatccacagggattgtttcaacttctactc 623  T

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Target: scaffold1657 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold1657
Description:

Target: scaffold1657; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 31 - 112
Target Start/End: Original strand, 234 - 315
Alignment:
Q  31 ttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggactgtttcaatttctactcg 112  Q
    |||||||||||||| |||||||  ||  |||||||||||||||||||||||| || |||  || ||||||||| || |||||    
T  234 ttttagcaagtgtattaaaaatgcatcgaagtaataaaatttataagttcgtctccacaaagattgtttcaatctcaactcg 315  T

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Target: scaffold0043 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 75 - 112
Target Start/End: Complemental strand, 13910 - 13873
Alignment:
Q  75 aagttcgtatctacagggactgtttcaatttctactcg 112  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  13910 aagttcgtatccacagggactgtttcaatttctactcg 13873  T

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Target: scaffold0043; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 112
Target Start/End: Complemental strand, 11567 - 11530
Alignment:
Q  75 aagttcgtatctacagggactgtttcaatttctactcg 112  Q
    ||||||||||| ||||||||||||||||||| ||||||    
T  11567 aagttcgtatccacagggactgtttcaatttatactcg 11530  T

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Target: scaffold2073 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold2073
Description:

Target: scaffold2073; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 30 - 97
Target Start/End: Original strand, 635 - 700
Alignment:
Q  30 tttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggactgt 97  Q
    ||||||||||||||||||||| |||    |||| |||||||||| ||||||||||| |||||||||||    
T  635 tttttagcaagtgtactaaaactatcg--aagtgataaaatttacaagttcgtatccacagggactgt 700  T

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Target: scaffold0146 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 112
Target Start/End: Complemental strand, 36159 - 36105
Alignment:
Q  59 aagtaataaaatttataag-ttcgtatctacagggactgtttcaatttctactcg 112  Q
    ||||||||||||||||||| || ||||| ||||||| |||||||| |||||||||    
T  36159 aagtaataaaatttataagatttgtatccacagggagtgtttcaacttctactcg 36105  T

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Target: scaffold0045 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 112
Target Start/End: Original strand, 90344 - 90381
Alignment:
Q  75 aagttcgtatctacagggactgtttcaatttctactcg 112  Q
    ||||||||||| ||| ||||||||||||||||||||||    
T  90344 aagttcgtatccacatggactgtttcaatttctactcg 90381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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