View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18901_low_9 (Length: 404)

Name: NF18901_low_9
Description: NF18901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18901_low_9
NF18901_low_9
[»] chr4 (1 HSPs)
chr4 (1-384)||(22042311-22042694)
[»] chr3 (1 HSPs)
chr3 (1-384)||(2424722-2425105)


Alignment Details
Target: chr4 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 384
Target Start/End: Original strand, 22042311 - 22042694
Alignment:
Q  1 atagtggagaatcttatatgggaatactgtcgcgatatttactttggacacaggaaagtggtttatggatcttaaaggaaaagaagatgagttgcttaca 100  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  22042311 atagtggagaatcttatatgggaatactatcgcgatatttactttggacacaggaaagtggtt-atggatcttaaaggaaaagaagatgagttgcttaca 22042409  T
Q  101 aattttgaataaaccgcggaatctgcttttctcatggttgtagtatttgcactatctgtaacaaagcacaaattgagttccacatttgctcaagaaatac 200  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22042410 aattttgaaaaaaccgcggaatctgcttttctcatggttgtagtatttgcactatctgtaacaaagcacaaattgagttccacatttgctcaagaaatac 22042509  T
Q  201 aaaccgaaatctcattgaagatactagtatcattatcttgtgtggaatattttcgccatgtgcgcttgccagagtatatggaaaccattcgcaaggtaat 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  22042510 aaaccgaaatctcattgaagatactagtatcattatcttgtgtggaatattttcgccatgtgcgcttgccagagtatatggaaaccattcgcaaggtaac 22042609  T
Q  301 tgcaattgtt-agaagaatgagaattcttgtacattttttgtgaactccataccgtcttatggtgacttgacaaatgggccaggt 384  Q
    |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22042610 tgcaattgttaagaagaatgagaatgcttgtacattttttgtgaactccataccgtcttatggtgacttgacaaatgggccaggt 22042694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 384
Target Start/End: Complemental strand, 2425105 - 2424722
Alignment:
Q  1 atagtggagaatcttatatgggaatactgtcgcgatatttactttggacacaggaaagtggtttatggatcttaaaggaaaagaagatgagttgcttaca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | | ||||||||||||||||||||| |||||||||     
T  2425105 atagtggagaatcttatatgggaatactgtcgcgatatttactttggacacaggaaagtggct-acgcatcttaaaggaaaagaagatgtgttgcttacg 2425007  T
Q  101 aattttgaataaaccgcggaatctgcttttctcatggttgtagtatttgcactatctgtaacaaagcacaaattgagttccacatttgctcaagaaatac 200  Q
     |||| ||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||    
T  2425006 gatttcgaaaaaatcgcggaatctgcttttctcatggttgtagtatttgcactagctgtaacaaagcacaaattgagttccaaatttgctcaagaaatac 2424907  T
Q  201 aaaccgaaatctcattgaagatactagtatcattatcttgtgtggaatattttcgccatgtgcgcttgccagagtatatggaaaccattcgcaaggtaat 300  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  2424906 aaaccgaagtctcattgaagatactagtatcattatcttgtgtggaatattttcgccatgttcgcttgccagagtatatggaaaccattcgcaaggtaat 2424807  T
Q  301 tgcaattgtt-agaagaatgagaattcttgtacattttttgtgaactccataccgtcttatggtgacttgacaaatgggccaggt 384  Q
    ||||| |||| | |||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  2424806 tgcaagtgttaacaagaatgagaatgcttgtaccttttttgtgaactccataccgtcttatggcgacttgacaaatgggccaggt 2424722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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