View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18902_high_1 (Length: 531)
Name: NF18902_high_1
Description: NF18902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18902_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 463; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 1 - 515
Target Start/End: Complemental strand, 19338604 - 19338091
Alignment:
| Q |
1 |
atattaaacaacaataaaacgttaacgattacaaacaaaacacataagtaaatatcccnnnnnnnnccaaacataaacaagtttaagcatctgaaggctt |
100 |
Q |
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| T |
19338604 |
atattaaacaacaataaaacgttaacgattacaaacaaaacacataagtaaatatcccaaaaaaaaccaaacataaacaagtttaagcatctgaaggctt |
19338505 |
T |
|
| Q |
101 |
gaagtaagtttctggatattaaaactgatcttttgttctcctaaaatgcctaaaaaatcataatataatataaatttctgaagcattaagtgaccgctat |
200 |
Q |
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| T |
19338504 |
gaagtaagtttctggatattaaaactgatcttttgttctcctaaaatgcctaaaaaatcataatataatataaatttctgaagcattaagtgaccgctat |
19338405 |
T |
|
| Q |
201 |
taaagagggtatgatatccgctacagaaaatcaccctactacagatttcaaaatagacgcgactggctgctatgtcgccatagcagactgtagcaggatt |
300 |
Q |
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| T |
19338404 |
taaagagggtatgatatccgctacagaaaatcaccctactacagatttcaaaatagacgcgactggctgctatgtcgccatagcagactatagcaggatt |
19338305 |
T |
|
| Q |
301 |
tggaataaagtgcttaattatgttctttgttgtcgtaaaaatctggatgtaaagctttatcaaaatgaaatgaacaacaaaagcattctcctttaaatga |
400 |
Q |
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| T |
19338304 |
tggaataaagtgcttaattttgttc-ttgttggcgtaaaaatctggatgtaaagctttatcaaaatgaaatgaacaacaaaagcattctcctttaaatga |
19338206 |
T |
|
| Q |
401 |
tcacaacaaaggactttgtagactcattgcaacacaaaccaatatgagaaaaatgatgcatataacggtcacctctgatataacatttatcaacttccca |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |
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| T |
19338205 |
tcacaacaaaggactttgtagactcattgcaacacaaaccaatatgagaaaaatgatgcatataatggttacctctgatataacatttatcaacttccca |
19338106 |
T |
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| Q |
501 |
gttaaacgaaataac |
515 |
Q |
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| T |
19338105 |
gttaaacgaaataac |
19338091 |
T |
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