View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18902_high_2 (Length: 371)
Name: NF18902_high_2
Description: NF18902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18902_high_2 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 6 - 371
Target Start/End: Complemental strand, 8003577 - 8003209
Alignment:
| Q |
6 |
ataagtaaagtctagctaataatagtttcggttaggattcgaacttggattctcccaaaagatttgtctgtaattgaatgtcattaactagttgagcaga |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
8003577 |
ataagtaaagtctagctaataatagtttcggttaggattcgaactcgggttctcccaaaaaatttgtctgtaattgaatgtcgttaactagttgagcaga |
8003478 |
T |
|
| Q |
106 |
accacatggatgattacgtgcaaacaaacaatataagagtgtgtgttcggctatacggtggcgaaaattgattttggttcaaactaagtttaagataaaa |
205 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8003477 |
accacatgggtgattacgtgcaaacaaacaatataagagtgtgtgttcggctatatggtggcgaaaattgattttggttcaaactaagtttaagataaaa |
8003378 |
T |
|
| Q |
206 |
tagttatgtttaaatttgtaaaccgaaagtgtgtcaaacaataaaattcattggnnnnnnnngatca---ttggaggcaaaaactaaaaatatcaacttt |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
8003377 |
tagttatgtttaaatttgtaaaccgaaagtgtgtcaaacaataaaattccttgaaaaaaaaagatcatgtttggaggcaaaaactaaaaatatcaacttt |
8003278 |
T |
|
| Q |
303 |
aagctagaatcaattctaatggcaaaatcaattctaatataaaacctccaaacatatcaaatcaattta |
371 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8003277 |
aagctagaatcgattctaatggcaaaatcaattctaatataaaacctccaaacatatcaaatcaattta |
8003209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 308 - 363
Target Start/End: Complemental strand, 7168912 - 7168857
Alignment:
| Q |
308 |
agaatcaattctaatggcaaaatcaattctaatataaaacctccaaacatatcaaa |
363 |
Q |
| |
|
||||||||||||| | ||||||||||||||||| |||| | ||||||||||||||| |
|
|
| T |
7168912 |
agaatcaattctactagcaaaatcaattctaatttaaatcatccaaacatatcaaa |
7168857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 340
Target Start/End: Original strand, 36706403 - 36706440
Alignment:
| Q |
303 |
aagctagaatcaattctaatggcaaaatcaattctaat |
340 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
36706403 |
aagctagaatcaattctaaaagcaaaatcaattctaat |
36706440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 363
Target Start/End: Original strand, 41115439 - 41115495
Alignment:
| Q |
307 |
tagaatcaattctaatggcaaaatcaattctaatataaaacctccaaacatatcaaa |
363 |
Q |
| |
|
|||||||||||||| ||||||||||||||| | |||||| ||||||||| ||||| |
|
|
| T |
41115439 |
tagaatcaattctacaagcaaaatcaattctactttaaaacatccaaacatgtcaaa |
41115495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University