View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18902_high_3 (Length: 250)
Name: NF18902_high_3
Description: NF18902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18902_high_3 |
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| [»] chr3 (7 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 8 - 250
Target Start/End: Complemental strand, 19338874 - 19338632
Alignment:
| Q |
8 |
ccaagaatataagttttaaaattttgtcttcaagtaaccataattgattgattcaagtgacagtgtgatcaagaaacaagttttcttaaaactcatctag |
107 |
Q |
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| T |
19338874 |
ccaaaaatataagttttaaaattttgtcttcaagtaaccataattgattgattcaagtgacagtgtgatcaagaaacaagttttcttaaaactcatctag |
19338775 |
T |
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| Q |
108 |
atgttccatccttgaattgaacttcacattaaccttcaagttaaaaacaaaatctcactataatccccaaatagcaatgcgtagaggtagagggccgatt |
207 |
Q |
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| T |
19338774 |
atgttccatccttgaattgaacttcacattaaccttcaagttaaaaacaaaatctcactataatccccaaatagcaatgcgtagaggtagagggccgatt |
19338675 |
T |
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| Q |
208 |
ccaaaaaccacgatgacagctgtttggaatctattttatacat |
250 |
Q |
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| T |
19338674 |
ccaaaaaccacgatgacagctgtttggaatctattttatacat |
19338632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 18 - 162
Target Start/End: Complemental strand, 18010699 - 18010555
Alignment:
| Q |
18 |
aagttttaaaattttgtcttcaagtaaccataattgattgattcaagtgacagtgtgatcaagaaacaagttttcttaaaactcatctagatgttccatc |
117 |
Q |
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| T |
18010699 |
aagttttaaaattttgtcttgaattgaccataattgattgattcaagtgacagtgtgatcgagaaacaagttttcttaaatctcatctagatgttccatc |
18010600 |
T |
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| Q |
118 |
cttgaattgaacttcacattaaccttcaagttaaaaacaaaatct |
162 |
Q |
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| T |
18010599 |
cttgaattgaacttaacattaaccttcaagttaaaaacaaaatct |
18010555 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 19417526 - 19417470
Alignment:
| Q |
20 |
gttttaaaattttgtcttcaagtaaccataattgattgattcaagtgacagtgtgat |
76 |
Q |
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| T |
19417526 |
gttttaaaattttgtcctgaagtgaccataattgattgattcaagtgacagtgtgat |
19417470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 18019248 - 18019202
Alignment:
| Q |
20 |
gttttaaaattttgtcttcaagtaaccataattgattgattcaagtg |
66 |
Q |
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| T |
18019248 |
gttttaaaattttgtcttgaagtgaccataattgattgattcaagtg |
18019202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 162
Target Start/End: Complemental strand, 19323797 - 19323716
Alignment:
| Q |
81 |
aaacaagttttcttaaaactcatctagatgttccatccttgaattgaacttcacattaaccttcaagttaaaaacaaaatct |
162 |
Q |
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| T |
19323797 |
aaaccagttttcgtaaatcccatctatatgttccatccttgaattgaactaaacatgaaccatcaacttcaaaacaaaatct |
19323716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 19379511 - 19379465
Alignment:
| Q |
20 |
gttttaaaattttgtcttcaagtaaccataattgattgattcaagtg |
66 |
Q |
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| T |
19379511 |
gttttaaaattttgtcttgaagtgaccataattgaatgattcaagtg |
19379465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 17947840 - 17947784
Alignment:
| Q |
20 |
gttttaaaattttgtcttcaagtaaccataattgattgattcaagtgacagtgtgat |
76 |
Q |
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| T |
17947840 |
gttttaaaattttgtcttgaagtgaccattatttgttgattcaagtggcagcgtgat |
17947784 |
T |
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