View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18902_low_3 (Length: 250)

Name: NF18902_low_3
Description: NF18902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18902_low_3
NF18902_low_3
[»] chr3 (7 HSPs)
chr3 (8-250)||(19338632-19338874)
chr3 (18-162)||(18010555-18010699)
chr3 (20-76)||(19417470-19417526)
chr3 (20-66)||(18019202-18019248)
chr3 (81-162)||(19323716-19323797)
chr3 (20-66)||(19379465-19379511)
chr3 (20-76)||(17947784-17947840)


Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 8 - 250
Target Start/End: Complemental strand, 19338874 - 19338632
Alignment:
Q  8 ccaagaatataagttttaaaattttgtcttcaagtaaccataattgattgattcaagtgacagtgtgatcaagaaacaagttttcttaaaactcatctag 107  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19338874 ccaaaaatataagttttaaaattttgtcttcaagtaaccataattgattgattcaagtgacagtgtgatcaagaaacaagttttcttaaaactcatctag 19338775  T
Q  108 atgttccatccttgaattgaacttcacattaaccttcaagttaaaaacaaaatctcactataatccccaaatagcaatgcgtagaggtagagggccgatt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19338774 atgttccatccttgaattgaacttcacattaaccttcaagttaaaaacaaaatctcactataatccccaaatagcaatgcgtagaggtagagggccgatt 19338675  T
Q  208 ccaaaaaccacgatgacagctgtttggaatctattttatacat 250  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  19338674 ccaaaaaccacgatgacagctgtttggaatctattttatacat 19338632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 18 - 162
Target Start/End: Complemental strand, 18010699 - 18010555
Alignment:
Q  18 aagttttaaaattttgtcttcaagtaaccataattgattgattcaagtgacagtgtgatcaagaaacaagttttcttaaaactcatctagatgttccatc 117  Q
    |||||||||||||||||||| || | |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  18010699 aagttttaaaattttgtcttgaattgaccataattgattgattcaagtgacagtgtgatcgagaaacaagttttcttaaatctcatctagatgttccatc 18010600  T
Q  118 cttgaattgaacttcacattaaccttcaagttaaaaacaaaatct 162  Q
    |||||||||||||| ||||||||||||||||||||||||||||||    
T  18010599 cttgaattgaacttaacattaaccttcaagttaaaaacaaaatct 18010555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 19417526 - 19417470
Alignment:
Q  20 gttttaaaattttgtcttcaagtaaccataattgattgattcaagtgacagtgtgat 76  Q
    |||||||||||||||| | |||| |||||||||||||||||||||||||||||||||    
T  19417526 gttttaaaattttgtcctgaagtgaccataattgattgattcaagtgacagtgtgat 19417470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 18019248 - 18019202
Alignment:
Q  20 gttttaaaattttgtcttcaagtaaccataattgattgattcaagtg 66  Q
    |||||||||||||||||| |||| |||||||||||||||||||||||    
T  18019248 gttttaaaattttgtcttgaagtgaccataattgattgattcaagtg 18019202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 162
Target Start/End: Complemental strand, 19323797 - 19323716
Alignment:
Q  81 aaacaagttttcttaaaactcatctagatgttccatccttgaattgaacttcacattaaccttcaagttaaaaacaaaatct 162  Q
    |||| ||||||| |||| | |||||| |||||||||||||||||||||||  |||| |||| |||| || ||||||||||||    
T  19323797 aaaccagttttcgtaaatcccatctatatgttccatccttgaattgaactaaacatgaaccatcaacttcaaaacaaaatct 19323716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 19379511 - 19379465
Alignment:
Q  20 gttttaaaattttgtcttcaagtaaccataattgattgattcaagtg 66  Q
    |||||||||||||||||| |||| ||||||||||| |||||||||||    
T  19379511 gttttaaaattttgtcttgaagtgaccataattgaatgattcaagtg 19379465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 17947840 - 17947784
Alignment:
Q  20 gttttaaaattttgtcttcaagtaaccataattgattgattcaagtgacagtgtgat 76  Q
    |||||||||||||||||| |||| ||||| |||  |||||||||||| ||| |||||    
T  17947840 gttttaaaattttgtcttgaagtgaccattatttgttgattcaagtggcagcgtgat 17947784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University