View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18903_high_12 (Length: 319)
Name: NF18903_high_12
Description: NF18903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18903_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 53720310 - 53720609
Alignment:
| Q |
1 |
cacagatacactagaacttgctttcgagtatgttattttcaccacagcataacaactcatctcttctgttatttttccaatattagagttcgacaataac |
100 |
Q |
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|||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||| |
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| T |
53720310 |
cacatatacactagaacttgctttcgagcatgttattttcaccacagcataacaaatcatctcttctgttatttttccaacattagagttcggcaataac |
53720409 |
T |
|
| Q |
101 |
agcccaagcccaaagcatccacgatattcactactattgatgtgtagagtttgaaaacaatacagcatcatgatttaaaagatttgaatattaaaaggcc |
200 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53720410 |
agcccaaacccaaagcatccacgatattcactactattgatgttttgagtttgaaaacaatacagcatcatgatttaaaagatttgaatattaaaaggcc |
53720509 |
T |
|
| Q |
201 |
aaacaagctgtgacctagtaacctagtagtcaaactaagaaaagaaaacgtacaaagatggagaaaaatacagcattagagtctagagaccggtggatat |
300 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53720510 |
aaacaagctatgacctagtaacctagtagtcaaactaagaaaagaaaacgtacaaagatggagaaaaatacagcattagagtctagagaccggtggatat |
53720609 |
T |
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