View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18903_high_19 (Length: 227)
Name: NF18903_high_19
Description: NF18903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18903_high_19 |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 50948702 - 50948510
Alignment:
| Q |
1 |
tctatagtcttctgccagattggccacctcttcatcagagagtcttttaacactcatgttttctatgtataattttaaagaagttcttgcattatcccat |
100 |
Q |
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| T |
50948702 |
tctatagtcttctgccagattggccacctcttcatcagagagtcttttaacactcatgttttctatgtataattttaaagaagttcttgcattatcccat |
50948603 |
T |
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| Q |
101 |
tttgagctccctccttttattagatttactgcatggatccctcctctttcttccatactacactgctggcccaacagctcttcagaaattata |
193 |
Q |
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| T |
50948602 |
tttgagctccctccttttattagatttactgcatggatccctcctctttcttccatactacactgctggcccaacagctcttcagaaattata |
50948510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 5 - 184
Target Start/End: Complemental strand, 50957928 - 50957749
Alignment:
| Q |
5 |
tagtcttctgccagattggccacctcttcatcagagagtcttttaacactcatgttttctatgtataattttaaagaagttcttgcattatcccattttg |
104 |
Q |
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| T |
50957928 |
tagtctttggccagcttggccacttctgcatcagatagtcttttaacactcatgttttctaagtgtaattttaaggaccttggtacgttaccccaatttg |
50957829 |
T |
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| Q |
105 |
agctccctccttttattagatttactgcatggatccctcctctttcttccatactacactgctggcccaacagctcttca |
184 |
Q |
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| T |
50957828 |
aactacctccatttatcagatttagtgtattgatcccccctctttcttccatactacactgctggcccaacacctcttca |
50957749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 96 - 184
Target Start/End: Complemental strand, 15856072 - 15855984
Alignment:
| Q |
96 |
cccattttgagctccctccttttattagatttactgcatggatccctcctctttcttccatactacactgctggcccaacagctcttca |
184 |
Q |
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| T |
15856072 |
cccattttgagctccctccttttataagatttactctatggaaccctactctttcttccatactacactgctggcccaacacctcttca |
15855984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 65
Target Start/End: Complemental strand, 15856163 - 15856121
Alignment:
| Q |
23 |
gccacctcttcatcagagagtcttttaacactcatgttttcta |
65 |
Q |
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| T |
15856163 |
gccacttctacatcagtgagtcttttaacactcatgttttcta |
15856121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 33631980 - 33631805
Alignment:
| Q |
1 |
tctatagtcttctgccagattggccacctcttcatcagagagtcttttaacactcatgttttctatgtataattttaaagaagttcttgcattatcccat |
100 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| || |||||||| ||| |||||||||| ||||| |
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| T |
33631980 |
tctatagtcttctgccagattggccacttcttcatcagagagtcttttaacactaatgttttctacatagaattttaagtaagctcttgcattaccccat |
33631881 |
T |
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| Q |
101 |
tttgagctccctccttttattagatttactgcatggatccctcctctttcttccatactacactgctggcccaaca |
176 |
Q |
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|||||||||||||||||||| |||||||||| || |||||||||||||| ||||||||||||||||||| |||||| |
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| T |
33631880 |
tttgagctccctccttttatcagatttactgtatcgatccctcctcttttttccatactacactgctggaccaaca |
33631805 |
T |
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