View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18903_high_7 (Length: 409)

Name: NF18903_high_7
Description: NF18903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18903_high_7
NF18903_high_7
[»] chr6 (8 HSPs)
chr6 (15-394)||(32931185-32931564)
chr6 (97-222)||(32919664-32919790)
chr6 (36-82)||(32920995-32921041)
chr6 (41-87)||(26493515-26493561)
chr6 (36-82)||(32926296-32926342)
chr6 (37-89)||(2468472-2468524)
chr6 (41-89)||(4005137-4005185)
chr6 (35-63)||(10338615-10338643)
[»] chr8 (4 HSPs)
chr8 (34-89)||(10440378-10440433)
chr8 (35-87)||(5739597-5739649)
chr8 (37-89)||(9696043-9696095)
chr8 (37-89)||(29651758-29651810)
[»] chr7 (2 HSPs)
chr7 (40-89)||(34395025-34395074)
chr7 (36-83)||(47450466-47450513)
[»] chr3 (6 HSPs)
chr3 (36-93)||(33331939-33331996)
chr3 (37-87)||(14032927-14032977)
chr3 (40-94)||(19129368-19129422)
chr3 (36-81)||(20167628-20167673)
chr3 (34-63)||(31652453-31652482)
chr3 (36-88)||(17105269-17105321)
[»] chr4 (5 HSPs)
chr4 (37-89)||(22402391-22402443)
chr4 (35-81)||(21606601-21606647)
chr4 (37-89)||(7422170-7422222)
chr4 (37-89)||(27131672-27131724)
chr4 (35-87)||(43978397-43978449)
[»] chr1 (1 HSPs)
chr1 (38-81)||(50186075-50186118)
[»] chr5 (2 HSPs)
chr5 (37-99)||(27249571-27249632)
chr5 (37-81)||(28735820-28735864)
[»] chr2 (3 HSPs)
chr2 (40-93)||(5453721-5453774)
chr2 (36-89)||(8518039-8518092)
chr2 (37-81)||(31095151-31095195)


Alignment Details
Target: chr6 (Bit Score: 372; Significance: 0; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 15 - 394
Target Start/End: Complemental strand, 32931564 - 32931185
Alignment:
Q  15 gacaatgacacgtgaaaagcgataataatttaagaaaatagaagtgatttaatataactacatgtgtcggtgtcggacattgacacatgtataacactgg 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32931564 gacaatgacacgtgaaaagcgataataatttaagaaaatagaagtgattaaatataactacatgtgtcggtgtcggacattgacacatgtataacactgg 32931465  T
Q  115 acacgccatcaatacgaggtgtcagtgctacatactttcagacgtctatgcagctaagacagtgtttgataaaattctacgattttgttagaaacaaagc 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32931464 acacgccatcaatacgaggtgtcagtgctacatactttcagacgtctatgcagctaagacagtgtttgataaaattctacgattttgttagaaacaaagc 32931365  T
Q  215 aatctcatttggcaacctcatgtcttcgtgaaacaaacggaaaccataaaagtttaaaccttattacgactagaaaagtatgatcttaaaaataaagaac 314  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32931364 aatctcatttggcaacctcatgtctttgtgaaacaaacggaaaccataaaagtttaaaccttattacgactagaaaagtatgatcttaaaaataaagaac 32931265  T
Q  315 atgcttaatattttcagcaacattaacataaatattaatcaaataggcaaatgcaatgaatagaataagtagttaaatga 394  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32931264 atgcttaatattttcagcaacattaacataaatattaatcaaataggcaaatgcaatgaatagaataagtagttaaatga 32931185  T

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Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 97 - 222
Target Start/End: Complemental strand, 32919790 - 32919664
Alignment:
Q  97 acacatgtataacactggacacgccatcaatacgaggtgtcagtgctacata-ctttcagacgtctatgcagctaagacagtgtttgataaaattctacg 195  Q
    ||||||||  ||||| |||||| || ||||| ||||||||  |||||||||| ||||||||| ||||||||||||||||| |||||||| ||||| || |    
T  32919790 acacatgtcaaacaccggacactccctcaatccgaggtgttggtgctacataactttcagacttctatgcagctaagacaatgtttgatgaaattgtatg 32919691  T
Q  196 attttgttagaaacaaagcaatctcat 222  Q
    || | ||||| ||||||||||| ||||    
T  32919690 atatcgttaggaacaaagcaatatcat 32919664  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 82
Target Start/End: Complemental strand, 32921041 - 32920995
Alignment:
Q  36 ataataatttaagaaaatagaagtgatttaatataactacatgtgtc 82  Q
    |||||||||||||||||| ||||||||||||| || |||||||||||    
T  32921041 ataataatttaagaaaattgaagtgatttaatgtagctacatgtgtc 32920995  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 87
Target Start/End: Complemental strand, 26493561 - 26493515
Alignment:
Q  41 aatttaagaaaatagaagtgatttaatataactacatgtgtcggtgt 87  Q
    ||||| ||||||||||||||||| ||| ||||||||||| |||||||    
T  26493561 aatttgagaaaatagaagtgattgaatgtaactacatgtatcggtgt 26493515  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 82
Target Start/End: Complemental strand, 32926342 - 32926296
Alignment:
Q  36 ataataatttaagaaaatagaagtgatttaatataactacatgtgtc 82  Q
    |||||||||||||||||| ||||||||||| | || |||||||||||    
T  32926342 ataataatttaagaaaattgaagtgatttagtgtagctacatgtgtc 32926296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 89
Target Start/End: Complemental strand, 2468524 - 2468472
Alignment:
Q  37 taataatttaagaaaatagaagtgatttaatataactacatgtgtcggtgtcg 89  Q
    ||||||||||||||||| ||||| ||| ||| |||| |||||||| |||||||    
T  2468524 taataatttaagaaaatggaagtaattgaatgtaaccacatgtgttggtgtcg 2468472  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 89
Target Start/End: Original strand, 4005137 - 4005185
Alignment:
Q  41 aatttaagaaaatagaagtgatttaatataactacatgtgtcggtgtcg 89  Q
    ||||||| ||||||||||||||| ||| ||| |||||||||| ||||||    
T  4005137 aatttaataaaatagaagtgattgaatgtaattacatgtgtcagtgtcg 4005185  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 63
Target Start/End: Original strand, 10338615 - 10338643
Alignment:
Q  35 gataataatttaagaaaatagaagtgatt 63  Q
    |||||||||||||||||||||||||||||    
T  10338615 gataataatttaagaaaatagaagtgatt 10338643  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 34 - 89
Target Start/End: Original strand, 10440378 - 10440433
Alignment:
Q  34 cgataataatttaagaaaatagaagtgatttaatataactacatgtgtcggtgtcg 89  Q
    ||||||||||||||||||||| |||||||| ||| | ||||||||||||| |||||    
T  10440378 cgataataatttaagaaaataaaagtgattgaatgttactacatgtgtcgttgtcg 10440433  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 5739597 - 5739649
Alignment:
Q  35 gataataatttaagaaaatagaagtgatttaatataactacatgtgtcggtgt 87  Q
    ||||||||||| ||||||| ||| ||||| ||| ||| |||||||||||||||    
T  5739597 gataataatttgagaaaatggaaatgattgaatgtaagtacatgtgtcggtgt 5739649  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 89
Target Start/End: Original strand, 9696043 - 9696095
Alignment:
Q  37 taataatttaagaaaatagaagtgatttaatataactacatgtgtcggtgtcg 89  Q
    |||||||||||| |||| ||||||||| ||||||||| || |||| |||||||    
T  9696043 taataatttaaggaaatggaagtgattgaatataacttcacgtgttggtgtcg 9696095  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 89
Target Start/End: Complemental strand, 29651810 - 29651758
Alignment:
Q  37 taataatttaagaaaatagaagtgatttaatataactacatgtgtcggtgtcg 89  Q
    ||||| ||||||||||||||||||||| ||  |||| |||||||| |||||||    
T  29651810 taatagtttaagaaaatagaagtgattgaacgtaacaacatgtgttggtgtcg 29651758  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 40 - 89
Target Start/End: Original strand, 34395025 - 34395074
Alignment:
Q  40 taatttaagaaaatagaagtgatttaatataactacatgtgtcggtgtcg 89  Q
    |||||||||||||||||||||||| ||| |||| ||| ||||||||||||    
T  34395025 taatttaagaaaatagaagtgattgaatctaaccacacgtgtcggtgtcg 34395074  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 36 - 83
Target Start/End: Complemental strand, 47450513 - 47450466
Alignment:
Q  36 ataataatttaagaaaatagaagtgatttaatataactacatgtgtcg 83  Q
    ||||||||||||||||||||||  |||||| |||||||| ||||||||    
T  47450513 ataataatttaagaaaatagaatggatttagtataactatatgtgtcg 47450466  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 36 - 93
Target Start/End: Complemental strand, 33331996 - 33331939
Alignment:
Q  36 ataataatttaagaaaatagaagtgatttaatataactacatgtgtcggtgtcggaca 93  Q
    |||||||||| |||||||| |||||||| ||| ||| |||||||||||||||| ||||    
T  33331996 ataataatttgagaaaataaaagtgattaaatgtaattacatgtgtcggtgtcagaca 33331939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 87
Target Start/End: Original strand, 14032927 - 14032977
Alignment:
Q  37 taataatttaagaaaatagaagtgatttaatataactacatgtgtcggtgt 87  Q
    ||||||||||||||||||||||||||| | |||||| |||| ||| |||||    
T  14032927 taataatttaagaaaatagaagtgattaagtataacaacatatgttggtgt 14032977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 94
Target Start/End: Complemental strand, 19129422 - 19129368
Alignment:
Q  40 taatttaagaaaatagaagtgatttaatataactacatgtgtcggtgtcggacat 94  Q
    |||||||||||||  | | ||||| ||||||||||||||||||||||||| ||||    
T  19129422 taatttaagaaaaatggaatgattgaatataactacatgtgtcggtgtcgtacat 19129368  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 81
Target Start/End: Original strand, 20167628 - 20167673
Alignment:
Q  36 ataataatttaagaaaatagaagtgatttaatataactacatgtgt 81  Q
    ||||||||||||| |||||||||||||||||| |||| ||| ||||    
T  20167628 ataataatttaaggaaatagaagtgatttaatgtaaccacacgtgt 20167673  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 63
Target Start/End: Original strand, 31652453 - 31652482
Alignment:
Q  34 cgataataatttaagaaaatagaagtgatt 63  Q
    ||||||||||||||||||||||||||||||    
T  31652453 cgataataatttaagaaaatagaagtgatt 31652482  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 36 - 88
Target Start/End: Original strand, 17105269 - 17105321
Alignment:
Q  36 ataataatttaagaaaatagaagtgatttaatataactacatgtgtcggtgtc 88  Q
    ||||||||||||||||||| |||||||| ||| ||||  ||| ||||||||||    
T  17105269 ataataatttaagaaaataaaagtgattgaatgtaacctcatttgtcggtgtc 17105321  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 89
Target Start/End: Original strand, 22402391 - 22402443
Alignment:
Q  37 taataatttaagaaaatagaagtgatttaatataactacatgtgtcggtgtcg 89  Q
    |||||| || ||||||||||||||||| ||| |||| ||||||||||||||||    
T  22402391 taataaattgagaaaatagaagtgattgaatgtaaccacatgtgtcggtgtcg 22402443  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 81
Target Start/End: Complemental strand, 21606647 - 21606601
Alignment:
Q  35 gataataatttaagaaaatagaagtgatttaatataactacatgtgt 81  Q
    |||||||||||||||||||| |||||||| | | |||||||||||||    
T  21606647 gataataatttaagaaaataaaagtgattaagtgtaactacatgtgt 21606601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 89
Target Start/End: Original strand, 7422170 - 7422222
Alignment:
Q  37 taataatttaagaaaatagaagtgatttaatataactacatgtgtcggtgtcg 89  Q
    ||||||||| ||||||||||||||||| ||| ||| || |||||| |||||||    
T  7422170 taataatttgagaaaatagaagtgattgaatgtaattatatgtgttggtgtcg 7422222  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 89
Target Start/End: Complemental strand, 27131724 - 27131672
Alignment:
Q  37 taataatttaagaaaatagaagtgatttaatataactacatgtgtcggtgtcg 89  Q
    ||||||||||||||||| ||||| ||| ||| |||| |||||||| |||||||    
T  27131724 taataatttaagaaaatggaagtaattgaatgtaaccacatgtgttggtgtcg 27131672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 43978449 - 43978397
Alignment:
Q  35 gataataatttaagaaaatagaagtgatttaatataactacatgtgtcggtgt 87  Q
    |||||||||||||||||| |||||||||  ||| |||||| |||||| |||||    
T  43978449 gataataatttaagaaaacagaagtgatagaatgtaactatatgtgttggtgt 43978397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 38 - 81
Target Start/End: Complemental strand, 50186118 - 50186075
Alignment:
Q  38 aataatttaagaaaatagaagtgatttaatataactacatgtgt 81  Q
    |||||||| | ||||||||||||||||||| |||||||||||||    
T  50186118 aataattttacaaaatagaagtgatttaatgtaactacatgtgt 50186075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 99
Target Start/End: Original strand, 27249571 - 27249632
Alignment:
Q  37 taataatttaagaaaatagaagtgatttaatataactacatgtgtcggtgtcggacattgaca 99  Q
    |||||||||| |||||| ||||||||| ||| || | |||||||| |||||||||||||||||    
T  27249571 taataatttatgaaaatggaagtgattaaatgtagc-acatgtgttggtgtcggacattgaca 27249632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 28735864 - 28735820
Alignment:
Q  37 taataatttaagaaaatagaagtgatttaatataactacatgtgt 81  Q
    ||||||||||||||||||||||||||| ||| ||| || ||||||    
T  28735864 taataatttaagaaaatagaagtgattgaatgtaattatatgtgt 28735820  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 93
Target Start/End: Original strand, 5453721 - 5453774
Alignment:
Q  40 taatttaagaaaatagaagtgatttaatataactacatgtgtcggtgtcggaca 93  Q
    |||||||||||||| ||||||||| |||||||| ||||| ||| || |||||||    
T  5453721 taatttaagaaaatggaagtgattgaatataaccacatgagtcagtatcggaca 5453774  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 89
Target Start/End: Original strand, 8518039 - 8518092
Alignment:
Q  36 ataataatttaagaaaatagaagtgatttaatataactacatgtgtcggtgtcg 89  Q
    |||| ||||| ||||||||||||| ||| ||| |||||| ||||||||||||||    
T  8518039 ataacaatttgagaaaatagaagtaattgaatgtaactaaatgtgtcggtgtcg 8518092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 31095151 - 31095195
Alignment:
Q  37 taataatttaagaaaatagaagtgatttaatataactacatgtgt 81  Q
    ||||||||| ||||||| ||||| ||| |||||||||||||||||    
T  31095151 taataatttgagaaaatggaagtaattgaatataactacatgtgt 31095195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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