View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18903_low_10 (Length: 365)
Name: NF18903_low_10
Description: NF18903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18903_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 89; Significance: 8e-43; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 185 - 314
Target Start/End: Complemental strand, 34506752 - 34506609
Alignment:
| Q |
185 |
gatccaagatggtcttcagtcaaaaagaaatcaaaagtccaagatggacattaattgaaatcaatgtgtttcattcacac--------------ttattt |
270 |
Q |
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| T |
34506752 |
gatccaagatggtcttcagtcaaaaagaaatcaaaagtccaagatggacattaattgaaatcaatgtgtttcattcacacttacaacttactttttattt |
34506653 |
T |
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| Q |
271 |
atctgtacattgaataaaattcaattgagtaaactatacttatc |
314 |
Q |
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| T |
34506652 |
atctgtacattgaataaaattcaattcagtaaactatgcttatc |
34506609 |
T |
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Target: chr7; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 16 - 120
Target Start/End: Complemental strand, 34506926 - 34506817
Alignment:
| Q |
16 |
attgtcgccataaacagtatccccttttataaaatttgaattgaattataaaatagtctcaattatatatatgtac-----acacacatatatcttgaat |
110 |
Q |
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| T |
34506926 |
attgtcgccataaatagcatcctcttttataaaatttgaattgaattataaaatagtctcaattatatatatgtacctagtacacacatatatcttgaat |
34506827 |
T |
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| Q |
111 |
atcttgagca |
120 |
Q |
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| T |
34506826 |
atcttgagca |
34506817 |
T |
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