View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18903_low_13 (Length: 323)
Name: NF18903_low_13
Description: NF18903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18903_low_13 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 12 - 304
Target Start/End: Complemental strand, 9218784 - 9218492
Alignment:
| Q |
12 |
agcagcagagacagctggtgctttgtcatatctacattcagctgcatcaattccaattattcatagagatgttaagagtaccaacattctcttggatgac |
111 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9218784 |
agcagcagagacagctggtgctttatcatatctacattcagctgcatcaattccaattatccatagagatgttaagagtaccaacattctcttggatgac |
9218685 |
T |
|
| Q |
112 |
aattacactgcaaaagtttccgacttcggagcttcaagattggttccacttgatcaaaccgagatagcaacaatggtacaaggaactcttggatacttag |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
9218684 |
aattacactgcaaaagtttccgacttcggagcttcaagattggttccacttgatcaaaccgagatagcgacaatggtacaaggaactcttggatacttag |
9218585 |
T |
|
| Q |
212 |
atccagagtatatgcaaacacatcaattaaccgaaaaaagtgatgtttatagctttggagtagttcttgcagagcttctaacaggtgccaaac |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9218584 |
atccagagtatatgcaaacacatcaattaaccgaaaaaagtgatgtgtatagctttggagtagttcttgcagagcttctaacaggtgccaaac |
9218492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 12 - 304
Target Start/End: Complemental strand, 9170701 - 9170409
Alignment:
| Q |
12 |
agcagcagagacagctggtgctttgtcatatctacattcagctgcatcaattccaattattcatagagatgttaagagtaccaacattctcttggatgac |
111 |
Q |
| |
|
|||||||||||||||||| ||||| || |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9170701 |
agcagcagagacagctggagctttatcgtatctacattcatctgcatcaattccaattatccatagagatgttaagagtaccaacattctcttggatgac |
9170602 |
T |
|
| Q |
112 |
aattacactgcaaaagtttccgacttcggagcttcaagattggttccacttgatcaaaccgagatagcaacaatggtacaaggaactcttggatacttag |
211 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
9170601 |
aattacactgccaaagtttccgacttcggagcttcaagattggttccacttgatcaaacagagatagcaacaatggtgcaaggaacacttggatacttag |
9170502 |
T |
|
| Q |
212 |
atccagagtatatgcaaacacatcaattaaccgaaaaaagtgatgtttatagctttggagtagttcttgcagagcttctaacaggtgccaaac |
304 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
9170501 |
atcccgagtatatgcaaacacataaattaaccgaaaaaagtgatgtttatagctttggagtagttcttgcagagcttctaacaggtgacaaac |
9170409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 12 - 304
Target Start/End: Original strand, 9118577 - 9118869
Alignment:
| Q |
12 |
agcagcagagacagctggtgctttgtcatatctacattcagctgcatcaattccaattattcatagagatgttaagagtaccaacattctcttggatgac |
111 |
Q |
| |
|
|||||||||||||||||| ||||| || |||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9118577 |
agcagcagagacagctggagctttatcgtatctacattcatctgcatcatttccaattatccatagagatgttaagagtaccaacattctcttggatgac |
9118676 |
T |
|
| Q |
112 |
aattacactgcaaaagtttccgacttcggagcttcaagattggttccacttgatcaaaccgagatagcaacaatggtacaaggaactcttggatacttag |
211 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
9118677 |
aattacactgcaaaagtttccgatttcggagcttccaaattggttccacttgatcaaaccgagatagcaacagtggtacaaggaacacttggatacttag |
9118776 |
T |
|
| Q |
212 |
atccagagtatatgcaaacacatcaattaaccgaaaaaagtgatgtttatagctttggagtagttcttgcagagcttctaacaggtgccaaac |
304 |
Q |
| |
|
| |||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
9118777 |
acccagagtacatgcaaacgcatcaattaaccgagaaaagtgatgtttatagctttggagtagttcttgcagagcttctaacaggtgacaaac |
9118869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 12 - 304
Target Start/End: Complemental strand, 9200268 - 9199976
Alignment:
| Q |
12 |
agcagcagagacagctggtgctttgtcatatctacattcagctgcatcaattccaattattcatagagatgttaagagtaccaacattctcttggatgac |
111 |
Q |
| |
|
|||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
9200268 |
agcagcggagacagctggagctttatcatatctacattcagctgcatcaattccaattatccacagagatgttaagagtaccaacattctcttggatgac |
9200169 |
T |
|
| Q |
112 |
aattacactgcaaaagtttccgacttcggagcttcaagattggttccacttgatcaaaccgagatagcaacaatggtacaaggaactcttggatacttag |
211 |
Q |
| |
|
|||||||| ||||||||||| ||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
9200168 |
aattacaccgcaaaagtttctgactttggagcttccagattggttccacttgatcaaacagagatagcaacaatggtgcaaggaacacttggatacttag |
9200069 |
T |
|
| Q |
212 |
atccagagtatatgcaaacacatcaattaaccgaaaaaagtgatgtttatagctttggagtagttcttgcagagcttctaacaggtgccaaac |
304 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
9200068 |
atcccgagtatatgcaaacacatcaactaaccgagaaaagtgatgtttatagctttggagtggttcttgcagagcttctaacaggtgacaaac |
9199976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 12 - 290
Target Start/End: Complemental strand, 9161875 - 9161597
Alignment:
| Q |
12 |
agcagcagagacagctggtgctttgtcatatctacattcagctgcatcaattccaattattcatagagatgttaagagtaccaacattctcttggatgac |
111 |
Q |
| |
|
||||||||||||||| || ||||| || ||| |||||||| |||||||||| || ||||| |||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
9161875 |
agcagcagagacagccggagctttatcgtatttacattcatctgcatcaatacctattatccatagagatgttaagagtaccaacattctcttagatgac |
9161776 |
T |
|
| Q |
112 |
aattacactgcaaaagtttccgacttcggagcttcaagattggttccacttgatcaaaccgagatagcaacaatggtacaaggaactcttggatacttag |
211 |
Q |
| |
|
||||||| |||||||||||| || || |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
9161775 |
aattacaatgcaaaagtttctgattttggagcttcgaggttggttccacttgatcaaaccgagatagcaacaatggtacaaggaactcttggttacttag |
9161676 |
T |
|
| Q |
212 |
atccagagtatatgcaaacacatcaattaaccgaaaaaagtgatgtttatagctttggagtagttcttgcagagcttct |
290 |
Q |
| |
|
|||| ||||||||||||||||||||| |||| || ||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
9161675 |
atccggagtatatgcaaacacatcaactaacagagaaaagtgatgtttatagctttggtgtagttcttgcagagcttct |
9161597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 12 - 296
Target Start/End: Complemental strand, 9155963 - 9155679
Alignment:
| Q |
12 |
agcagcagagacagctggtgctttgtcatatctacattcagctgcatcaattccaattattcatagagatgttaagagtaccaacattctcttggatgac |
111 |
Q |
| |
|
||||||||||||||| || ||||| || |||||||||||| |||||||||| || ||||| ||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
9155963 |
agcagcagagacagccggagctttatcgtatctacattcatctgcatcaataccgattatccatagagatgtcaaaagtaccaacattctcttggatgac |
9155864 |
T |
|
| Q |
112 |
aattacactgcaaaagtttccgacttcggagcttcaagattggttccacttgatcaaaccgagatagcaacaatggtacaaggaactcttggatacttag |
211 |
Q |
| |
|
|||||||| || ||||||||||| || |||||||| || || ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |
|
|
| T |
9155863 |
aattacacagcgaaagtttccgattttggagcttcgaggttagttccacttgatcaaaccgagatagcaacaatggttcaaggaactcttggatacctag |
9155764 |
T |
|
| Q |
212 |
atccagagtatatgcaaacacatcaattaaccgaaaaaagtgatgtttatagctttggagtagttcttgcagagcttctaacagg |
296 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||| ||||| |||||||| ||||| |
|
|
| T |
9155763 |
atccagagtatatgcaaactcatcaattaaccgagaaaagtgatgtctatagctttggagtagtgcttgcggagcttctgacagg |
9155679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 31 - 293
Target Start/End: Complemental strand, 9229650 - 9229388
Alignment:
| Q |
31 |
gctttgtcatatctacattcagctgcatcaattccaattattcatagagatgttaagagtaccaacattctcttggatgacaattacactgcaaaagttt |
130 |
Q |
| |
|
||||| ||||||||||||||| ||||||| | |||||||| ||||||||||| || ||| ||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
9229650 |
gctttatcatatctacattcatctgcatccttaccaattatccatagagatgtcaaaagtgccaacattctcttggatgacaattacactgcaaaagtgt |
9229551 |
T |
|
| Q |
131 |
ccgacttcggagcttcaagattggttccacttgatcaaaccgagatagcaacaatggtacaaggaactcttggatacttagatccagagtatatgcaaac |
230 |
Q |
| |
|
| || || || |||||||||||||||||||||||||| || |||||| || ||||||||||||||||||| || ||||||||||| ||||||||||| |
|
|
| T |
9229550 |
ctgattttggtgcttcaagattggttccacttgatcatactatgatagccactgtggtacaaggaactcttggctatttagatccagaatatatgcaaac |
9229451 |
T |
|
| Q |
231 |
acatcaattaaccgaaaaaagtgatgtttatagctttggagtagttcttgcagagcttctaac |
293 |
Q |
| |
|
||| ||| |||| || |||||||||||||||||||| || ||||| || |||||||| ||||| |
|
|
| T |
9229450 |
acaccaactaacagagaaaagtgatgtttatagcttcggggtagtactggcagagctcctaac |
9229388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 31 - 285
Target Start/End: Original strand, 1868608 - 1868862
Alignment:
| Q |
31 |
gctttgtcatatctacattcagctgcatcaattccaattattcatagagatgttaagagtaccaacattctcttggatgacaattacactgcaaaagttt |
130 |
Q |
| |
|
||||||||||||||||||||| ||| ||||| || || || ||||||||||| |||||| ||||||||||| ||| | |||| || ||||| | |
|
|
| T |
1868608 |
gctttgtcatatctacattcatatgcctcaatacccatcatccatagagatgtcaagagtgataacattctcttagatagaaccaacaccgccaaagtat |
1868707 |
T |
|
| Q |
131 |
ccgacttcggagcttcaagattggttccacttgatcaaaccgagatagcaacaatggtacaaggaactcttggatacttagatccagagtatatgcaaac |
230 |
Q |
| |
|
| || || |||||||||||||||||||||||||||||||| || ||||| |||||||| ||||||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
1868708 |
cggattttggagcttcaagattggttccacttgatcaaactgaaatagccacaatggtgcaaggaactattggctacttagatccagagtatatgcaaac |
1868807 |
T |
|
| Q |
231 |
acatcaattaaccgaaaaaagtgatgtttatagctttggagtagttcttgcagag |
285 |
Q |
| |
|
| ||||||||| |||||||||||||| |||||||||||||||||||||| |||| |
|
|
| T |
1868808 |
aagtcaattaactgaaaaaagtgatgtctatagctttggagtagttcttgtagag |
1868862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 32 - 285
Target Start/End: Original strand, 1843000 - 1843253
Alignment:
| Q |
32 |
ctttgtcatatctacattcagctgcatcaattccaattattcatagagatgttaagagtaccaacattctcttggatgacaattacactgcaaaagtttc |
131 |
Q |
| |
|
|||||||||||||||||||| ||| ||||| ||||| || ||||||||||| |||||| ||||||||||| ||| | |||| || ||||| || |
|
|
| T |
1843000 |
ctttgtcatatctacattcatatgcctcaataccaataatccatagagatgtcaagagtgataacattctcttagatagaaccaacacagccaaagtatc |
1843099 |
T |
|
| Q |
132 |
cgacttcggagcttcaagattggttccacttgatcaaaccgagatagcaacaatggtacaaggaactcttggatacttagatccagagtatatgcaaaca |
231 |
Q |
| |
|
|| || ||||||||||||||||||||| |||||||||| || ||||| |||||||| ||||||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
1843100 |
agattttggagcttcaagattggttccaattgatcaaactgaaatagccacaatggtgcaaggaactattggctacttagatccagagtatatgcaaaca |
1843199 |
T |
|
| Q |
232 |
catcaattaaccgaaaaaagtgatgtttatagctttggagtagttcttgcagag |
285 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||||||||||||||| |||| |
|
|
| T |
1843200 |
agtcaattaactgaaaaaagtgatgtctatagctttggagtagttcttgtagag |
1843253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 35 - 280
Target Start/End: Original strand, 1857014 - 1857259
Alignment:
| Q |
35 |
tgtcatatctacattcagctgcatcaattccaattattcatagagatgttaagagtaccaacattctcttggatgacaattacactgcaaaagtttccga |
134 |
Q |
| |
|
||||||||||||||||| ||| |||| || || || ||||||||||| |||||| ||||||||||| |||| | |||| || ||||| || || |
|
|
| T |
1857014 |
tgtcatatctacattcatatgcctcaacacccatcatccatagagatgtcaagagtgataacattctcttagatggaaccaacaccgccaaagtgtcgga |
1857113 |
T |
|
| Q |
135 |
cttcggagcttcaagattggttccacttgatcaaaccgagatagcaacaatggtacaaggaactcttggatacttagatccagagtatatgcaaacacat |
234 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| || ||||| |||||||| ||||||||| |||| ||||||||||||||||||||||||||| | |
|
|
| T |
1857114 |
ttttggagcttcaagattggttccacttgatcaaactgaaatagccacaatggtgcaaggaactattggctacttagatccagagtatatgcaaacaagt |
1857213 |
T |
|
| Q |
235 |
caattaaccgaaaaaagtgatgtttatagctttggagtagttcttg |
280 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
1857214 |
caattaactgaaaaaagtgatgtctatagctttggagtagttcttg |
1857259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 24 - 293
Target Start/End: Complemental strand, 1816041 - 1815772
Alignment:
| Q |
24 |
agctggtgctttgtcatatctacattcagctgcatcaattccaattattcatagagatgttaagagtaccaacattctcttggatgacaattacactgca |
123 |
Q |
| |
|
|||||| ||| |||||||||| ||||||||||| ||||| || ||||| ||||||||||| |||||| | ||||||||||| |||| | |||| || |
|
|
| T |
1816041 |
agctggagctctgtcatatctgcattcagctgcctcaatacccattatccatagagatgtcaagagtgctaacattctcttagatggaaccaacaccgct |
1815942 |
T |
|
| Q |
124 |
aaagtttccgacttcggagcttcaagattggttccacttgatcaaaccgagatagcaacaatggtacaaggaactcttggatacttagatccagagtata |
223 |
Q |
| |
|
||||| || || || ||||| ||||| ||| |||||||||||||||| || |||| |||||||| ||||||||| |||| ||||| ||||||||||||| |
|
|
| T |
1815941 |
aaagtgtcagattttggagcatcaaggttgattccacttgatcaaactgaagtagccacaatggtgcaaggaactattggctacttggatccagagtata |
1815842 |
T |
|
| Q |
224 |
tgcaaacacatcaattaaccgaaaaaagtgatgtttatagctttggagtagttcttgcagagcttctaac |
293 |
Q |
| |
|
|||||||| |||||||| || ||||||||||| |||||||||||||||||||||| ||||| ||||| |
|
|
| T |
1815841 |
tgcaaacaagccaattaactgagaaaagtgatgtatatagctttggagtagttcttgtggagctgctaac |
1815772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 272
Target Start/End: Complemental strand, 41703857 - 41703820
Alignment:
| Q |
235 |
caattaaccgaaaaaagtgatgtttatagctttggagt |
272 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
41703857 |
caattaaccgataaaagtgatgtttatagctatggagt |
41703820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 296
Target Start/End: Original strand, 40573369 - 40573430
Alignment:
| Q |
235 |
caattaaccgaaaaaagtgatgtttatagctttggagtagttcttgcagagcttctaacagg |
296 |
Q |
| |
|
|||||||| || || |||||||||||||| ||||||||||| || |||||||| || ||||| |
|
|
| T |
40573369 |
caattaacagagaagagtgatgtttatagatttggagtagtcctagcagagctactgacagg |
40573430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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