View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18903_low_16 (Length: 318)
Name: NF18903_low_16
Description: NF18903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18903_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 23 - 299
Target Start/End: Complemental strand, 53782198 - 53781922
Alignment:
| Q |
23 |
acattcacgtctttatgttatactatatatataaccaaatatgctaagtgctaacataaacactaactcatgaattttaacttcaaaaaagaagattgag |
122 |
Q |
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| T |
53782198 |
acattcacgtctttatgttatactatatatataaccaaatatgctaagtgctaacataaacactaactcatgaattttaacttcaaaaaagaagattgag |
53782099 |
T |
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| Q |
123 |
acacaaagccaaaactttggcaaattaacattatggaggaagtggcggaaatagtgaaaaaacagagttctctggcaatctcaactcctccagttcaagt |
222 |
Q |
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| T |
53782098 |
acacaaagccaaaactttggcaaattaacattatggaggaagtggcggaaatagtgaaaaaacagagttctctggcaatctcaactcctccagttcaagt |
53781999 |
T |
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| Q |
223 |
tcaagttaatcatcaaatacattctccaaattcaataagctttacaaaaagcccttataattctcgttttatgaaca |
299 |
Q |
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| T |
53781998 |
tcaagttaatcatcaaatacattctccaaattcaataagctttccaaaaagcccttataattctcgttttatgaaca |
53781922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 46 - 183
Target Start/End: Complemental strand, 2094133 - 2093996
Alignment:
| Q |
46 |
tatatatataaccaaatatgctaagtgctaacataaacactaactcatgaattttaacttcaaaaaagaagattgagacacaaagccaaaactttggcaa |
145 |
Q |
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|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2094133 |
tatatatataaccaaatatgctaagtgctaacataaactccaactcatgaattttaacttcaaaaaagaagattgagacacaaagccaaaactttggcaa |
2094034 |
T |
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| Q |
146 |
attaacattatggaggaagtggcggaaatagtgaaaaa |
183 |
Q |
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| T |
2094033 |
attagcattatggaggaagtggtggaaatagtgaaaaa |
2093996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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