View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18903_low_19 (Length: 255)

Name: NF18903_low_19
Description: NF18903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18903_low_19
NF18903_low_19
[»] chr7 (3 HSPs)
chr7 (17-165)||(15668583-15668731)
chr7 (178-255)||(1537947-1538024)
chr7 (190-236)||(3997161-3997207)
[»] scaffold0289 (1 HSPs)
scaffold0289 (17-165)||(21359-21507)
[»] chr6 (5 HSPs)
chr6 (173-255)||(31633566-31633648)
chr6 (174-255)||(33325828-33325908)
chr6 (186-254)||(17112220-17112288)
chr6 (175-255)||(14372172-14372252)
chr6 (188-248)||(16298790-16298850)
[»] scaffold0012 (2 HSPs)
scaffold0012 (173-255)||(52721-52803)
scaffold0012 (175-255)||(103718-103798)
[»] scaffold0195 (2 HSPs)
scaffold0195 (173-255)||(8971-9052)
scaffold0195 (173-255)||(14360-14441)
[»] chr8 (3 HSPs)
chr8 (173-255)||(29250227-29250308)
chr8 (174-255)||(29355118-29355199)
chr8 (175-255)||(17274722-17274802)
[»] chr3 (2 HSPs)
chr3 (177-251)||(10997443-10997517)
chr3 (174-254)||(1051302-1051382)
[»] chr1 (15 HSPs)
chr1 (173-251)||(32943767-32943844)
chr1 (175-255)||(12629235-12629315)
chr1 (174-255)||(19100297-19100377)
chr1 (173-255)||(34507854-34507935)
chr1 (174-255)||(13533447-13533528)
chr1 (175-255)||(15120850-15120930)
chr1 (175-255)||(15145038-15145118)
chr1 (173-255)||(28016008-28016090)
chr1 (173-255)||(34879900-34879982)
chr1 (175-255)||(15114126-15114206)
chr1 (175-255)||(15127142-15127222)
chr1 (175-255)||(34517691-34517771)
chr1 (173-255)||(3833411-3833492)
chr1 (173-255)||(31893126-31893206)
chr1 (173-255)||(41574283-41574364)
[»] scaffold0291 (1 HSPs)
scaffold0291 (173-255)||(15534-15616)
[»] chr2 (5 HSPs)
chr2 (173-255)||(21565870-21565952)
chr2 (173-255)||(40926445-40926527)
chr2 (173-255)||(17151307-17151389)
chr2 (175-255)||(20477437-20477517)
chr2 (175-255)||(22169952-22170032)
[»] chr4 (4 HSPs)
chr4 (186-255)||(23795474-23795543)
chr4 (173-233)||(25219687-25219747)
chr4 (173-255)||(20367495-20367577)
chr4 (175-219)||(20543193-20543237)
[»] scaffold0013 (1 HSPs)
scaffold0013 (173-255)||(100989-101070)
[»] chr5 (4 HSPs)
chr5 (202-255)||(2259410-2259463)
chr5 (175-255)||(5781066-5781146)
chr5 (56-84)||(17237793-17237821)
chr5 (175-255)||(19068680-19068760)
[»] scaffold0437 (1 HSPs)
scaffold0437 (175-255)||(14316-14396)
[»] scaffold0114 (1 HSPs)
scaffold0114 (202-255)||(2989-3042)


Alignment Details
Target: chr7 (Bit Score: 137; Significance: 1e-71; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 17 - 165
Target Start/End: Original strand, 15668583 - 15668731
Alignment:
Q  17 atgcacatgcctaaacgcaccgtatttgaaagagtcgaaaaagaagcaacaatattgcatttaaatctctctggactcggtttagtccaacgaatattat 116  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15668583 atgcacatgcctaaatgcaccgtatttgaaagagtcgaaaaagaagcaacaatattgcatttaaatctctctggactcggtttagtccaacgaatattat 15668682  T
Q  117 gctggtcaacctgtgaattttatgggtgtggcaaaacttcacccgctgc 165  Q
    |||||||||||||||||||||||||||||||| |||||||||| |||||    
T  15668683 gctggtcaacctgtgaattttatgggtgtggcgaaacttcaccagctgc 15668731  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 255
Target Start/End: Original strand, 1537947 - 1538024
Alignment:
Q  178 gcaaggagtaaggacagacatcgggaggaaacaccgatatcccaattaggttggcatcctgagaaacctccgtcctat 255  Q
    |||||||||| |||||||||||  ||||||||||||| ||||||| ||||||| || |  | ||||||||| ||||||    
T  1537947 gcaaggagtagggacagacatcaagaggaaacaccgacatcccaactaggttgccacctagggaaacctccatcctat 1538024  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 236
Target Start/End: Original strand, 3997161 - 3997207
Alignment:
Q  190 gacagacatcgggaggaaacaccgatatcccaattaggttggcatcc 236  Q
    |||||||||| ||||| |||||||| ||||||| |||||||||||||    
T  3997161 gacagacatcaggaggcaacaccgacatcccaactaggttggcatcc 3997207  T

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Target: scaffold0289 (Bit Score: 129; Significance: 7e-67; HSPs: 1)
Name: scaffold0289
Description:

Target: scaffold0289; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 17 - 165
Target Start/End: Original strand, 21359 - 21507
Alignment:
Q  17 atgcacatgcctaaacgcaccgtatttgaaagagtcgaaaaagaagcaacaatattgcatttaaatctctctggactcggtttagtccaacgaatattat 116  Q
    ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  21359 atgcacatgcctaaatgcaccgtatttgaaagagtcaaaaaagaagcaacaatattgcatttaaatctctctgaactcggtttagtccaacgaatattat 21458  T
Q  117 gctggtcaacctgtgaattttatgggtgtggcaaaacttcacccgctgc 165  Q
    |||||||||||||||||||||||||||||||| |||||||||| |||||    
T  21459 gctggtcaacctgtgaattttatgggtgtggcgaaacttcaccagctgc 21507  T

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Target: chr6 (Bit Score: 67; Significance: 7e-30; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 173 - 255
Target Start/End: Original strand, 31633566 - 31633648
Alignment:
Q  173 gctaagcaaggagtaaggacagacatcgggaggaaacaccgatatcccaattaggttggcatcctgagaaacctccgtcctat 255  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||| ||||||||||||||||    
T  31633566 gctaagcaaggagtaaggacagacatcgggaggaaacaccgacatcccaactagattggcatcctgggaaacctccgtcctat 31633648  T

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Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 174 - 255
Target Start/End: Original strand, 33325828 - 33325908
Alignment:
Q  174 ctaagcaaggagtaaggacagacatcgggaggaaacaccgatatcccaattaggttggcatcctgagaaacctccgtcctat 255  Q
    ||||||||||||||||||||||||| ||||||||||||||| || |||| |||| |||||||| | ||||||||||||||||    
T  33325828 ctaagcaaggagtaaggacagacattgggaggaaacaccgacataccaactaggctggcatcc-gggaaacctccgtcctat 33325908  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 254
Target Start/End: Original strand, 17112220 - 17112288
Alignment:
Q  186 taaggacagacatcgggaggaaacaccgatatcccaattaggttggcatcctgagaaacctccgtccta 254  Q
    ||||||||||||||||||||||||||||| ||  ||| ||| ||||||| | | ||||||||| |||||    
T  17112220 taaggacagacatcgggaggaaacaccgacatatcaactagattggcattccgggaaacctccatccta 17112288  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 14372172 - 14372252
Alignment:
Q  175 taagcaaggagtaaggacagacatcgggaggaaacaccgatatcccaattaggttggcatcctgagaaacctccgtcctat 255  Q
    ||||||||||| | |||||||||||  |||| |||| ||| ||||||| ||||||||||  | |||||| |||| ||||||    
T  14372172 taagcaaggagaatggacagacatcaagaggcaacatcgacatcccaactaggttggcactccgagaaatctccatcctat 14372252  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 248
Target Start/End: Original strand, 16298790 - 16298850
Alignment:
Q  188 aggacagacatcgggaggaaacaccgatatcccaattaggttggcatcctgagaaacctcc 248  Q
    ||||||| |||||||||| | || ||| ||||||| ||||||||||||| |||| ||||||    
T  16298790 aggacaggcatcgggaggcatcatcgacatcccaactaggttggcatcccgagatacctcc 16298850  T

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Target: scaffold0012 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 173 - 255
Target Start/End: Complemental strand, 52803 - 52721
Alignment:
Q  173 gctaagcaaggagtaaggacagacatcgggaggaaacaccgatatcccaattaggttggcatcctgagaaacctccgtcctat 255  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| | || ||||||||||||||||    
T  52803 gctaagcaaggagtaaggacagacatcgggaggaaacaccgaaatcccaactaggttggcaccttgggaaacctccgtcctat 52721  T

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Target: scaffold0012; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 255
Target Start/End: Complemental strand, 103798 - 103718
Alignment:
Q  175 taagcaaggagtaaggacagacatcgggaggaaacaccgatatcccaattaggttggcatcctgagaaacctccgtcctat 255  Q
    ||||||||||| | |||| ||||||  |||| |||| ||| ||||||| |||||||||| || |||||| |||| ||||||    
T  103798 taagcaaggagaatggaccgacatcaagaggcaacatcgacatcccaactaggttggcaccccgagaaatctccatcctat 103718  T

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Target: scaffold0195 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: scaffold0195
Description:

Target: scaffold0195; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 173 - 255
Target Start/End: Original strand, 8971 - 9052
Alignment:
Q  173 gctaagcaaggagtaaggacagacatcgggaggaaacaccgatatcccaattaggttggcatcctgagaaacctccgtcctat 255  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||| | ||||||||||||||||    
T  8971 gctaagcaaggagtaaggacagacatcgggaggaaacaccgacataccaactaggttggcatcc-gggaaacctccgtcctat 9052  T

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Target: scaffold0195; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 173 - 255
Target Start/End: Original strand, 14360 - 14441
Alignment:
Q  173 gctaagcaaggagtaaggacagacatcgggaggaaacaccgatatcccaattaggttggcatcctgagaaacctccgtcctat 255  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||| | ||||||||||||||||    
T  14360 gctaagcaaggagtaaggacagacatcgggaggaaacaccgacataccaactaggttggcatcc-gggaaacctccgtcctat 14441  T

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Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 173 - 255
Target Start/End: Original strand, 29250227 - 29250308
Alignment:
Q  173 gctaagcaaggagtaaggacagacatcgggaggaaacaccgatatcccaattaggttggcatcctgagaaacctccgtcctat 255  Q
    |||||||||||||||||||||||||||||||||||||||||  || |||| ||||||||||||| | ||||||||||||||||    
T  29250227 gctaagcaaggagtaaggacagacatcgggaggaaacaccggcataccaactaggttggcatcc-gggaaacctccgtcctat 29250308  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 174 - 255
Target Start/End: Complemental strand, 29355199 - 29355118
Alignment:
Q  174 ctaagcaaggagtaaggacagacatcgggaggaaacaccgatatcccaattaggttggcatcctgagaaacctccgtcctat 255  Q
    ||||||| ||||||||||||  |||| |||| ||| ||||| |||| ||||||||| |||||| | |||||||||| |||||    
T  29355199 ctaagcagggagtaaggacattcatcaggagaaaaaaccgacatcctaattaggtttgcatcccgggaaacctccgacctat 29355118  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 255
Target Start/End: Complemental strand, 17274802 - 17274722
Alignment:
Q  175 taagcaaggagtaaggacagacatcgggaggaaacaccgatatcccaattaggttggcatcctgagaaacctccgtcctat 255  Q
    ||||||||||| | |||||||||||  |||| |||| ||| ||||||| | |||||||| | ||||||| |||| ||||||    
T  17274802 taagcaaggagaatggacagacatcaagaggcaacatcgacatcccaacttggttggcaccgtgagaaatctccatcctat 17274722  T

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Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 177 - 251
Target Start/End: Complemental strand, 10997517 - 10997443
Alignment:
Q  177 agcaaggagtaaggacagacatcgggaggaaacaccgatatcccaattaggttggcatcctgagaaacctccgtc 251  Q
    |||||||| |||||||||||||||||| |||||||||| |||||||||||||||||| || ||||||||||||||    
T  10997517 agcaaggactaaggacagacatcgggacgaaacaccgacatcccaattaggttggcaccccgagaaacctccgtc 10997443  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 254
Target Start/End: Original strand, 1051302 - 1051382
Alignment:
Q  174 ctaagcaaggagtaaggacagacatcgggaggaaacaccgatatcccaattaggttggcatcctgagaaacctccgtccta 254  Q
    ||||||||||||  |||||| |||||  |||| |||||||| ||||||| |||||||||| |  | ||||||||| |||||    
T  1051302 ctaagcaaggagagaggacaaacatcaagagggaacaccgacatcccaactaggttggcacctcgggaaacctccatccta 1051382  T

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Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 173 - 251
Target Start/End: Complemental strand, 32943844 - 32943767
Alignment:
Q  173 gctaagcaaggagtaaggacagacatcgggaggaaacaccgatatcccaattaggttggcatcctgagaaacctccgtc 251  Q
    |||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||||||| | ||||||||||||    
T  32943844 gctaagcaaggagtaaggacagacattgggaggaaacaccgacataccaattaggttggcatcc-gggaaacctccgtc 32943767  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 12629235 - 12629315
Alignment:
Q  175 taagcaaggagtaaggacagacatcgggaggaaacaccgatatcccaattaggttggcatcctgagaaacctccgtcctat 255  Q
    ||||||||||||||||||| |||||||||| ||||||||| ||||||| ||| ||||||||| | ||||||||||||||||    
T  12629235 taagcaaggagtaaggacaaacatcgggagaaaacaccgacatcccaactagattggcatcccgggaaacctccgtcctat 12629315  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 174 - 255
Target Start/End: Complemental strand, 19100377 - 19100297
Alignment:
Q  174 ctaagcaaggagtaaggacagacatcgggaggaaacaccgatatcccaattaggttggcatcctgagaaacctccgtcctat 255  Q
    |||||||||||||||||||| |||||||||||||||| ||| || |||| ||||||||||||| | |||||| |||||||||    
T  19100377 ctaagcaaggagtaaggacaaacatcgggaggaaacatcgacataccaactaggttggcatcc-gggaaaccaccgtcctat 19100297  T

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Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 173 - 255
Target Start/End: Original strand, 34507854 - 34507935
Alignment:
Q  173 gctaagcaaggagtaaggacagacatcgggaggaaacaccgatatcccaattaggttggcatcctgagaaacctccgtcctat 255  Q
    ||||||||||||||||||||| |||||||||||||| || || || |||| ||||||||||| | | ||||||||||||||||    
T  34507854 gctaagcaaggagtaaggacatacatcgggaggaaatactgacataccaactaggttggcattc-gggaaacctccgtcctat 34507935  T

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Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 174 - 255
Target Start/End: Complemental strand, 13533528 - 13533447
Alignment:
Q  174 ctaagcaaggagtaaggacagacatcgggaggaaacaccgatatcccaattaggttggcatcctgagaaacctccgtcctat 255  Q
    |||||||||||||||||  ||||||| ||||||||||||||||||  || ||| || ||| || || |||||||||||||||    
T  13533528 ctaagcaaggagtaagggtagacatcaggaggaaacaccgatatctaaactagattagcaccccgaaaaacctccgtcctat 13533447  T

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Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 15120850 - 15120930
Alignment:
Q  175 taagcaaggagtaaggacagacatcgggaggaaacaccgatatcccaattaggttggcatcctgagaaacctccgtcctat 255  Q
    |||||||||||||| |||| ||||| ||||||||||| || || ||||||||||| ||| || | ||||||||| ||||||    
T  15120850 taagcaaggagtaacgacaaacatcaggaggaaacactgacatgccaattaggttagcaccccgggaaacctccatcctat 15120930  T

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Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 15145038 - 15145118
Alignment:
Q  175 taagcaaggagtaaggacagacatcgggaggaaacaccgatatcccaattaggttggcatcctgagaaacctccgtcctat 255  Q
    |||||||||||||| |||| ||||| ||||||||||| || || ||||||||||| ||| || | ||||||||| ||||||    
T  15145038 taagcaaggagtaacgacaaacatcaggaggaaacactgacatgccaattaggttagcaccccgggaaacctccatcctat 15145118  T

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Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 173 - 255
Target Start/End: Complemental strand, 28016090 - 28016008
Alignment:
Q  173 gctaagcaaggagtaaggacagacatcgggaggaaacaccgatatcccaattaggttggcatcctgagaaacctccgtcctat 255  Q
    |||||||| |||||||||||||||||| | |||||||||||| ||||||| || |||| || ||   |||| |||||||||||    
T  28016090 gctaagcagggagtaaggacagacatcagaaggaaacaccgacatcccaactaagttgacaccccaggaaatctccgtcctat 28016008  T

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Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 173 - 255
Target Start/End: Original strand, 34879900 - 34879982
Alignment:
Q  173 gctaagcaaggagtaaggacagacatcgggaggaaacaccgatatcccaattaggttggcatcctgagaaacctccgtcctat 255  Q
    |||| ||| |||||||||||||||||  | || ||||||||| |||| || |||||||||| || || |||||||||||||||    
T  34879900 gctaggcagggagtaaggacagacattagaagaaaacaccgacatcctaactaggttggcaccccgaaaaacctccgtcctat 34879982  T

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Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 15114126 - 15114206
Alignment:
Q  175 taagcaaggagtaaggacagacatcgggaggaaacaccgatatcccaattaggttggcatcctgagaaacctccgtcctat 255  Q
    |||||||||||||| |||| ||||| ||||||||||| || || ||||||||||| ||| ||   ||||||||| ||||||    
T  15114126 taagcaaggagtaacgacaaacatcaggaggaaacactgacatgccaattaggttagcaccccaggaaacctccatcctat 15114206  T

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Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 15127142 - 15127222
Alignment:
Q  175 taagcaaggagtaaggacagacatcgggaggaaacaccgatatcccaattaggttggcatcctgagaaacctccgtcctat 255  Q
    |||||||||||||| |||| ||||| ||||||||||| || || ||||||||||| ||| ||   ||||||||| ||||||    
T  15127142 taagcaaggagtaacgacaaacatcaggaggaaacactgacatgccaattaggttagcaccccaggaaacctccatcctat 15127222  T

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Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 255
Target Start/End: Complemental strand, 34517771 - 34517691
Alignment:
Q  175 taagcaaggagtaaggacagacatcgggaggaaacaccgatatcccaattaggttggcatcctgagaaacctccgtcctat 255  Q
    ||||||||||| || ||||  ||||  || |||||| ||| |||||||| |||||||||||| ||||||||||| ||||||    
T  34517771 taagcaaggagaaatgacaagcatcaagaagaaacatcgacatcccaataaggttggcatcccgagaaacctccatcctat 34517691  T

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Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 255
Target Start/End: Original strand, 3833411 - 3833492
Alignment:
Q  173 gctaagcaaggagtaaggacagacatcgggaggaaacaccgatatcccaattaggttggcatcctgagaaacctccgtcctat 255  Q
    |||||||| |||| ||| ||||||||| |||||  ||||||| ||||||| |||||||||| || | ||| ||||||||||||    
T  3833411 gctaagcatggagaaag-acagacatcaggaggctacaccgacatcccaactaggttggcaccccgggaagcctccgtcctat 3833492  T

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Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 255
Target Start/End: Complemental strand, 31893206 - 31893126
Alignment:
Q  173 gctaagcaaggagtaaggacagacatcgggaggaaacaccgatatcccaattaggttggcatcctgagaaacctccgtcctat 255  Q
    |||||||| |||| ||| ||||||||| ||||| | |||||| ||||||| ||||||||||||| ||||| ||||| ||||||    
T  31893206 gctaagcagggaggaag-acagacatcaggaggca-caccgacatcccaactaggttggcatcccgagaagcctccatcctat 31893126  T

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Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 255
Target Start/End: Original strand, 41574283 - 41574364
Alignment:
Q  173 gctaagcaaggagtaaggacagacatcgggaggaaacaccgatatcccaattaggttggcatcctgagaaacctccgtcctat 255  Q
    |||| |||||||| |||||||||||||   |||||||||| | ||||||| ||||||| || |||| ||||||||| ||||||    
T  41574283 gctaggcaaggagaaaggacagacatcaaaaggaaacaccaacatcccaactaggttgacaccctg-gaaacctccatcctat 41574364  T

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Target: scaffold0291 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 173 - 255
Target Start/End: Original strand, 15534 - 15616
Alignment:
Q  173 gctaagcaaggagtaaggacagacatcgggaggaaacaccgatatcccaattaggttggcatcctgagaaacctccgtcctat 255  Q
    ||||||||||||||||||||||||||| |||| ||||||||| || ||||  ||||||||| |||  |||| |||||||||||    
T  15534 gctaagcaaggagtaaggacagacatcaggagaaaacaccgacattccaaccaggttggcaccctaggaaatctccgtcctat 15616  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 173 - 255
Target Start/End: Complemental strand, 21565952 - 21565870
Alignment:
Q  173 gctaagcaaggagtaaggacagacatcgggaggaaacaccgatatcccaattaggttggcatcctgagaaacctccgtcctat 255  Q
    |||||||| |||||||||||| |||||  |||||||||| || || |||| ||||||||||||| |  |||||||||||||||    
T  21565952 gctaagcatggagtaaggacaaacatcatgaggaaacactgacattccaactaggttggcatcccggaaaacctccgtcctat 21565870  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 173 - 255
Target Start/End: Original strand, 40926445 - 40926527
Alignment:
Q  173 gctaagcaaggagtaaggacagacatcgggaggaaacaccgatatcccaattaggttggcatcctgagaaacctccgtcctat 255  Q
    |||||||| ||||||||||||  |||| |||||||||| ||| ||||||| |||||||||| || | ||||||||| ||||||    
T  40926445 gctaagcagggagtaaggacatgcatcaggaggaaacatcgacatcccaactaggttggcaccccgggaaacctccatcctat 40926527  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 173 - 255
Target Start/End: Complemental strand, 17151389 - 17151307
Alignment:
Q  173 gctaagcaaggagtaaggacagacatcgggaggaaacaccgatatcccaattaggttggcatcctgagaaacctccgtcctat 255  Q
    ||||||||||||||||||| || |||| ||||||||||| || || |||| ||||||||||  | | ||||||||| ||||||    
T  17151389 gctaagcaaggagtaaggataggcatcaggaggaaacactgacatgccaactaggttggcactccgggaaacctccatcctat 17151307  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 255
Target Start/End: Complemental strand, 20477517 - 20477437
Alignment:
Q  175 taagcaaggagtaaggacagacatcgggaggaaacaccgatatcccaattaggttggcatcctgagaaacctccgtcctat 255  Q
    ||||||||||| |||||||||||||  |||| | || ||| ||||||| |||||||||| || |||| |||||| ||||||    
T  20477517 taagcaaggagaaaggacagacatcaagaggcatcatcgacatcccaactaggttggcaccccgagatacctccatcctat 20477437  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 22169952 - 22170032
Alignment:
Q  175 taagcaaggagtaaggacagacatcgggaggaaacaccgatatcccaattaggttggcatcctgagaaacctccgtcctat 255  Q
    |||||||||||  ||||||| ||||  |||| | || | | ||||||||||||||||||||| |||| |||||| ||||||    
T  22169952 taagcaaggagagaggacaggcatcaagaggcatcatcaacatcccaattaggttggcatcccgagagacctccatcctat 22170032  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 186 - 255
Target Start/End: Complemental strand, 23795543 - 23795474
Alignment:
Q  186 taaggacagacatcgggaggaaacaccgatatcccaattaggttggcatcctgagaaacctccgtcctat 255  Q
    |||||||| ||||| |||| ||| ||||| ||||||| ||||||||||||||| ||||||||| ||||||    
T  23795543 taaggacaaacatcaggagaaaataccgacatcccaactaggttggcatcctgtgaaacctccatcctat 23795474  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 173 - 233
Target Start/End: Complemental strand, 25219747 - 25219687
Alignment:
Q  173 gctaagcaaggagtaaggacagacatcgggaggaaacaccgatatcccaattaggttggca 233  Q
    |||| |||||||||||||||| ||||| |||||||||||||| || |||| ||||||||||    
T  25219747 gctacgcaaggagtaaggacatacatcaggaggaaacaccgacattccaactaggttggca 25219687  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 173 - 255
Target Start/End: Original strand, 20367495 - 20367577
Alignment:
Q  173 gctaagcaaggagtaaggacagacatcgggaggaaacaccgatatcccaattaggttggcatcctgagaaacctccgtcctat 255  Q
    |||||||||||| |||||||||||||  |||||||||||| | |||||| | |||||| ||||  | |||||||| |||||||    
T  20367495 gctaagcaaggaataaggacagacattaggaggaaacaccaacatcccagtcaggttgacatctcgggaaacctctgtcctat 20367577  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 219
Target Start/End: Complemental strand, 20543237 - 20543193
Alignment:
Q  175 taagcaaggagtaaggacagacatcgggaggaaacaccgatatcc 219  Q
    ||||||| |||||||||||||||||  ||||||||||||| ||||    
T  20543237 taagcaatgagtaaggacagacatcaagaggaaacaccgacatcc 20543193  T

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Target: scaffold0013 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 173 - 255
Target Start/End: Complemental strand, 101070 - 100989
Alignment:
Q  173 gctaagcaaggagtaaggacagacatcgggaggaaacaccgatatcccaattaggttggcatcctgagaaacctccgtcctat 255  Q
    ||||||||||||||||||||||||||| || | ||| ||||| || ||||  ||||||||| || | ||||||||||||||||    
T  101070 gctaagcaaggagtaaggacagacatcaggggaaaataccgacattccaaccaggttggca-cccgggaaacctccgtcctat 100989  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 202 - 255
Target Start/End: Original strand, 2259410 - 2259463
Alignment:
Q  202 gaggaaacaccgatatcccaattaggttggcatcctgagaaacctccgtcctat 255  Q
    ||||||||||||| ||||||| ||||||||||||| | ||||||||| ||||||    
T  2259410 gaggaaacaccgacatcccaactaggttggcatcccgggaaacctccatcctat 2259463  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 5781066 - 5781146
Alignment:
Q  175 taagcaaggagtaaggacagacatcgggaggaaacaccgatatcccaattaggttggcatcctgagaaacctccgtcctat 255  Q
    |||||||||||  |||||||||||   |||| |||| ||| ||||||| ||||||||||||| ||||||| ||| ||||||    
T  5781066 taagcaaggagggaggacagacattaagaggcaacatcgacatcccaactaggttggcatcccgagaaacttccatcctat 5781146  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 84
Target Start/End: Original strand, 17237793 - 17237821
Alignment:
Q  56 aaagaagcaacaatattgcatttaaatct 84  Q
    |||||||||||||||||||||||||||||    
T  17237793 aaagaagcaacaatattgcatttaaatct 17237821  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 19068680 - 19068760
Alignment:
Q  175 taagcaaggagtaaggacagacatcgggaggaaacaccgatatcccaattaggttggcatcctgagaaacctccgtcctat 255  Q
    ||||||| |||  |||||||||||   |||| |||| ||| |||| || |||||||||| |||||||||||||| ||||||    
T  19068680 taagcaatgagagaggacagacattaagaggcaacatcgacatccaaactaggttggcaccctgagaaacctccatcctat 19068760  T

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Target: scaffold0437 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0437
Description:

Target: scaffold0437; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 14316 - 14396
Alignment:
Q  175 taagcaaggagtaaggacagacatcgggaggaaacaccgatatcccaattaggttggcatcctgagaaacctccgtcctat 255  Q
    |||||||||||  ||||||||||||  |||| | || ||| ||||||| ||||||||||||| |||| |||||| ||||||    
T  14316 taagcaaggagagaggacagacatcaagaggcatcatcgacatcccaactaggttggcatcccgagagacctccatcctat 14396  T

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Target: scaffold0114 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 202 - 255
Target Start/End: Original strand, 2989 - 3042
Alignment:
Q  202 gaggaaacaccgatatcccaattaggttggcatcctgagaaacctccgtcctat 255  Q
    ||||||||||||| ||||| ||||||||||||||| | | ||||||| ||||||    
T  2989 gaggaaacaccgacatcccgattaggttggcatcccggggaacctccatcctat 3042  T

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