View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18903_low_20 (Length: 246)
Name: NF18903_low_20
Description: NF18903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18903_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 11526511 - 11526285
Alignment:
| Q |
1 |
aaaaatacttcctaccagaccagaacaccaacagtttgaaaaatattaatacaaaaccaccaactttgaaaatatcaattttacattctagtacacaaca |
100 |
Q |
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| T |
11526511 |
aaaaatacttcctacatgaccagaacactaacagtttgaaaatttttaatacaacaccaccaactttgaaaatatcaattttacattctaatacacaaca |
11526412 |
T |
|
| Q |
101 |
ggtacttaccttctacacactcaacatctactattttctcttatgttagagcaagccatgttaaacgtgttcaaaagttgcaacacaaagatgaccatcc |
200 |
Q |
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| T |
11526411 |
ggtacttaccttctatacactcaacatttactattttctcttaagttagagcaagccaggttaaaagtgttcaaaagttgcaacacaaagatgaccatcc |
11526312 |
T |
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| Q |
201 |
aagactacatgtatataatgagtatat |
227 |
Q |
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| T |
11526311 |
aagactacatgtatataatgagtatat |
11526285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 4079184 - 4079087
Alignment:
| Q |
1 |
aaaaatacttcctaccagaccagaacaccaacagtttgaaaaatattaatacaaaaccaccaactttgaaaatatcaattttacattctagtacacaa |
98 |
Q |
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| T |
4079184 |
aaaattactttcttccagaccaaaacaccatcagtttaaaaaatatgaatacaacaccgccaagtttgaaaatatcaaatttacattatactacacaa |
4079087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 16350750 - 16350847
Alignment:
| Q |
1 |
aaaaatacttcctaccagaccagaacaccaacagtttgaaaaatattaatacaaaaccaccaactttgaaaatatcaattttacattctagtacacaa |
98 |
Q |
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|||| ||||| || |||||||| | ||||| |||||| |||||||| ||||||| |||||||| |||||||||||||| |||||||| || ||||||| |
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| T |
16350750 |
aaaattactttcttccagaccaaaccaccatcagtttaaaaaatatgaatacaacaccaccaagtttgaaaatatcaaatttacattatactacacaa |
16350847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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