View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18903_low_21 (Length: 230)
Name: NF18903_low_21
Description: NF18903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18903_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 18 - 218
Target Start/End: Complemental strand, 43213131 - 43212931
Alignment:
| Q |
18 |
tttttgttgttgttaacttcaggaattggtggagtgggagcataagagtaaagtacctggaaagatgcatggatgtggtcatgatgctcatgttgctatg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43213131 |
tttttgttgttgttaacttcaggaattggtggagtgggagcataagagtaaagtacctggaaagatgcatggatgtggtcatgatgctcatgttgctatg |
43213032 |
T |
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| Q |
118 |
cttctaggtgctgctaagattctcaaggagcatgaaaaagagttacaggtatggtttttatgttcaattcatcttaatacatgagataactttatccttt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43213031 |
cttctaggtgctgctaagattctcaaggagcatgaaaaagagttacaggtatggtttttatgttcaattcatcttaatacatgagataactttatccttt |
43212932 |
T |
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| Q |
218 |
g |
218 |
Q |
| |
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| |
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|
| T |
43212931 |
g |
43212931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 38 - 176
Target Start/End: Original strand, 41650643 - 41650781
Alignment:
| Q |
38 |
aggaattggtggagtgggagcataagagtaaagtacctggaaagatgcatggatgtggtcatgatgctcatgttgctatgcttctaggtgctgctaagat |
137 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||| |||||||||||||| |
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| T |
41650643 |
aggaattggtggagtgggagcataagagtaaagtacctggaaagatgcatgcatgtggtcatgatgctcacgtggctatgcttcttggtgctgctaagat |
41650742 |
T |
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| Q |
138 |
tctcaaggagcatgaaaaagagttacaggtatggttttt |
176 |
Q |
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| T |
41650743 |
tctcaaggaacatgaaaaagagttacaagtatggttttt |
41650781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 29 - 177
Target Start/End: Original strand, 41654992 - 41655140
Alignment:
| Q |
29 |
gttaacttcaggaattggtggagtgggagcataagagtaaagtacctggaaagatgcatggatgtggtcatgatgctcatgttgctatgcttctaggtgc |
128 |
Q |
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|||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||| ||||| |
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| T |
41654992 |
gttaaccttaggaattggtggagtgggagcataagagtaaagtgcctggaaagatgcatgcatgtggccatgatgctcatgttgctatgcttcttggtgc |
41655091 |
T |
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| Q |
129 |
tgctaagattctcaaggagcatgaaaaagagttacaggtatggttttta |
177 |
Q |
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||||||||| |||||||| ||||||||| |||||||||||||||||||| |
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| T |
41655092 |
tgctaagatcctcaaggaacatgaaaaacagttacaggtatggttttta |
41655140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 18 - 173
Target Start/End: Complemental strand, 43206196 - 43206041
Alignment:
| Q |
18 |
tttttgttgttgttaacttcaggaattggtggagtgggagcataagagtaaagtacctggaaagatgcatggatgtggtcatgatgctcatgttgctatg |
117 |
Q |
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||||||||||| || | | ||||| ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
43206196 |
tttttgttgtttttgatgttaggaaatggtggagtgggagcataaaagtaaagtacctggaaagatgcatgcatgtggtcatgatgctcatgttgctatg |
43206097 |
T |
|
| Q |
118 |
cttctaggtgctgctaagattctcaaggagcatgaaaaagagttacaggtatggtt |
173 |
Q |
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||||| ||||||||||||||||||||||| | ||||||| | ||||| |||||||| |
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| T |
43206096 |
cttcttggtgctgctaagattctcaaggaccgtgaaaaacatttacatgtatggtt |
43206041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 29 - 162
Target Start/End: Complemental strand, 43223984 - 43223851
Alignment:
| Q |
29 |
gttaacttcaggaattggtggagtgggagcataagagtaaagtacctggaaagatgcatggatgtggtcatgatgctcatgttgctatgcttctaggtgc |
128 |
Q |
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|||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||| ||||| |
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| T |
43223984 |
gttaaccttaggaattggtggagtgggagcataagagtaaagtgcctggaaagatgcatgcatgtggccatgatgctcatgttgctatgcttcttggtgc |
43223885 |
T |
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| Q |
129 |
tgctaagattctcaaggagcatgaaaaagagtta |
162 |
Q |
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||||||||| |||||||| ||||||||| ||||| |
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| T |
43223884 |
tgctaagatcctcaaggaacatgaaaaacagtta |
43223851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 38 - 176
Target Start/End: Complemental strand, 43227508 - 43227370
Alignment:
| Q |
38 |
aggaattggtggagtgggagcataagagtaaagtacctggaaagatgcatggatgtggtcatgatgctcatgttgctatgcttctaggtgctgctaagat |
137 |
Q |
| |
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|||||||| |||| ||||||||||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||| |
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| T |
43227508 |
aggaattgttggaatgggagcataaaagcaaagtacctggaaagatgcatgcatgtggtcatgatgctcatgttgctatgcttcttggtgctgcaaagat |
43227409 |
T |
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| Q |
138 |
tctcaaggagcatgaaaaagagttacaggtatggttttt |
176 |
Q |
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|||||| |||| |||||||||||||| ||||||||||| |
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| T |
43227408 |
cctcaagcagcacgaaaaagagttacaagtatggttttt |
43227370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 78 - 164
Target Start/End: Original strand, 31558552 - 31558638
Alignment:
| Q |
78 |
aaagatgcatggatgtggtcatgatgctcatgttgctatgcttctaggtgctgctaagattctcaaggagcatgaaaaagagttaca |
164 |
Q |
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||||||||||| ||||||||||||||||||||| | ||||| || |||||||| |||||||| || | |||||||||||| |||| |
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| T |
31558552 |
aaagatgcatgcgtgtggtcatgatgctcatgttaccatgctacttggtgctgcaaagattcttaaacaacatgaaaaagagataca |
31558638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 38 - 167
Target Start/End: Complemental strand, 5072802 - 5072673
Alignment:
| Q |
38 |
aggaattggtggagtgggagcataagagtaaagtacctggaaagatgcatggatgtggtcatgatgctcatgttgctatgcttctaggtgctgctaagat |
137 |
Q |
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||||| |||||||||||||||| | |||||| ||||||||||||||||||| ||||||||||||||||||||| | ||||| || |||||||| ||||| |
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| T |
5072802 |
aggaaatggtggagtgggagcacaggagtaaggtacctggaaagatgcatgcgtgtggtcatgatgctcatgttaccatgctacttggtgctgcaaagat |
5072703 |
T |
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| Q |
138 |
tctcaaggagcatgaaaaagagttacaggt |
167 |
Q |
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||||||| |||||||||||||| ||||||| |
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| T |
5072702 |
tctcaagcagcatgaaaaagagatacaggt |
5072673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 75 - 164
Target Start/End: Complemental strand, 34595251 - 34595162
Alignment:
| Q |
75 |
tggaaagatgcatggatgtggtcatgatgctcatgttgctatgcttctaggtgctgctaagattctcaaggagcatgaaaaagagttaca |
164 |
Q |
| |
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|||||||||||||| ||||||| |||||||||||||| ||||| || |||||| | ||||||||||| | |||||||||||| |||| |
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| T |
34595251 |
tggaaagatgcatgagtgtggtcgtgatgctcatgttgtcatgctacttggtgctacaaagattctcaaacaacatgaaaaagagataca |
34595162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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