View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18903_low_26 (Length: 206)
Name: NF18903_low_26
Description: NF18903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18903_low_26 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 159; Significance: 7e-85; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 24 - 186
Target Start/End: Complemental strand, 53054237 - 53054075
Alignment:
| Q |
24 |
aggccatggagattaaacatgttattaagctgattcaaattgaaatgagggccaggtagacttctttgaacacttgctatagtagatactctcccatcac |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53054237 |
aggccatggagattaaacatgttattaagctgattcaaattgaaatgagggccaggtagacttctttgaacacttgctatagtagatactctcccatcac |
53054138 |
T |
|
| Q |
124 |
gccttcccaattcaacgttataaaatggcccccctgcctacaatattgtactagttaaactat |
186 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53054137 |
gccttcccaattcaacattataaaatggcccccctgcctacaatattgtactagttaaactat |
53054075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University