View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18903_low_4 (Length: 461)
Name: NF18903_low_4
Description: NF18903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18903_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 39 - 328
Target Start/End: Complemental strand, 9580028 - 9579739
Alignment:
| Q |
39 |
gagagctatatggttgggaaggagacatgttgaacacaatgttggagggaaaggagtagggatatgatagcatgggaagaggagaattcgaatatgtatt |
138 |
Q |
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| T |
9580028 |
gagagctatatggtcgggaaggagacatgttgaacacaatgttggagggaagggagtagggatatgatagcatgggaagaggataattcgaatatatatt |
9579929 |
T |
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| Q |
139 |
ctgtcaagtcagattataatgttctaaacgtcgagagtgttggtgatgaggagtttccgatnnnnnnncttcggaataaaattattccgtcgaaggtgtc |
238 |
Q |
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| T |
9579928 |
ctgtcaagtcagcttataatgttctaaacggcgagagtgttggtgatgaggagtttccgataaaaaaacttcggaataaaattattctgtcgaaggtgtc |
9579829 |
T |
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| Q |
239 |
cgtgtttgtatggcaggtaatgcaaaatcgtattccacccacgcacagtctatgtagaagaggaattataggtagggaggagttacattg |
328 |
Q |
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| T |
9579828 |
cgtgtttgtatggcaggtaatgcaaaatcgtattccacccaagcacagtccatgtagaagaggaattataggtagggatgagttacattg |
9579739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 212 - 461
Target Start/End: Original strand, 32718392 - 32718632
Alignment:
| Q |
212 |
gaataaaattattccgtcgaaggtgtccgtgtttgtatggcaggtaatgcaaaatcgtattccacccacgcacagtctatgtagaagaggaattataggt |
311 |
Q |
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| T |
32718392 |
gaataaaattattccgtcgaaggtgtttgtgtttgtatggcaggtaatgcaaaatcgtattccatccgaggacaatctatgtagaagaggaattataggt |
32718491 |
T |
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| Q |
312 |
agggaggagttacattgcacataggaggatgtggagagatagagacttctaacagcttatgttttgcttgcccgactgtatcaaaaaagtatggttcgga |
411 |
Q |
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| T |
32718492 |
agggaggagttacattg--cataggaggatgtggagagat--agacttccaaccacttattttttgcttgcccgactgtctc--aaaagtctggttcaga |
32718585 |
T |
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| Q |
412 |
attgcgcattggctgggagtacaggtggtactgtttcacaatatgtgtac |
461 |
Q |
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| T |
32718586 |
attgcgcaatggcttggtgtacaggtgg---tgtttcacaatatgagtac |
32718632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 152 - 461
Target Start/End: Complemental strand, 9585468 - 9585163
Alignment:
| Q |
152 |
ttataatgttctaaacgtcgagagtgttggtgatgaggagtttccgatnnnnnnn--cttcggaataaaattattccgtcgaaggtgtccgtgtttgtat |
249 |
Q |
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| T |
9585468 |
ttataatgttctaaatggcgagagtgttggtgatggggagtttccgatacaaaaatactttggaataaaattattatgtcgaaggtgtccgtgtttgtat |
9585369 |
T |
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| Q |
250 |
ggcaggtaatgcaaaatcgtattccacccacgcacagtctatgtagaagaggaattataggtagggaggagttacattgcacataggaggatgtggagag |
349 |
Q |
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| T |
9585368 |
ggtaggtaatgcaaaattgtattccatcaaaggacaatttatgtagaaaagaaattataggtaggtaagagttacatt-tgcatagaaggatgtagagag |
9585270 |
T |
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| Q |
350 |
atagagacttctaacagcttatgttttgcttgcccgactgtatcaaaaaagtatggttcggaattgcgcattggctgggagtacaggtggtactgtttca |
449 |
Q |
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| T |
9585269 |
acacatacttctagccacttattttttgcatgcccgactgta--agaaaagtatggttcggaattgtgcattggctgggagtacagatggta---tttca |
9585175 |
T |
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| Q |
450 |
caatatgtgtac |
461 |
Q |
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| T |
9585174 |
cattatgtgtac |
9585163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 361 - 440
Target Start/End: Complemental strand, 9579733 - 9579654
Alignment:
| Q |
361 |
taacagcttatgttttgcttgcccgactgtatcaaaaaagtatggttcggaattgcgcattggctgggagtacaggtggt |
440 |
Q |
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| T |
9579733 |
taacagcttatgttttgcttgcccaactgtatcaaaaaagtatggttcggaattgcgcattggctgggagtacaagtggt |
9579654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 39 - 86
Target Start/End: Complemental strand, 9585562 - 9585515
Alignment:
| Q |
39 |
gagagctatatggttgggaaggagacatgttgaacacaatgttggagg |
86 |
Q |
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| T |
9585562 |
gagagctatatggttgggaaggagacacgctgaacacaatattggagg |
9585515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 43 - 86
Target Start/End: Original strand, 32718297 - 32718340
Alignment:
| Q |
43 |
gctatatggttgggaaggagacatgttgaacacaatgttggagg |
86 |
Q |
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| T |
32718297 |
gctatatagttgggatggagacatgttgaacacaatgttggagg |
32718340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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