View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18903_low_5 (Length: 445)
Name: NF18903_low_5
Description: NF18903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18903_low_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 21 - 440
Target Start/End: Complemental strand, 43646332 - 43645917
Alignment:
| Q |
21 |
gtaataacaggtgaagtgtttttgcttgtttaccttggtattatatatcagcatgggctgcttcttgtagttaagctattgttgaccttaattttcagtt |
120 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43646332 |
gtaataacaggtgaagtgtttttgcgtgtttaccttggtattatatatcagcacgggctgcttcttgtagttaagctattgttgaccttaattttcagtt |
43646233 |
T |
|
| Q |
121 |
atactctttccatattgacacattatgctgtaga---tagtttatcatgagtctatatgctttagtttcaattaatttgttggttttttagtggaatgta |
217 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
43646232 |
atactctttccatattgacacattatgcggtagacagtagtttatcatgattctatatgctgtagtttcaattaatttgttgg-tttttagtggagtgta |
43646134 |
T |
|
| Q |
218 |
accacaagccacatttcccttatttcattttgcagtcacatttttccgatgactgggataagaagtcacatttgatgcttcggaatctgtttctattaga |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | | || | ||||||||||||||||||||||| |
|
|
| T |
43646133 |
accacaagccacatttcccttatttcattttgcagtcacatttttccaatgactgggataag-----atacctgct-cttcggaatctgtttctattaga |
43646040 |
T |
|
| Q |
318 |
agttgcttagctattgagcattatgaatcgtttctgatatggctgaggtttatattttannnnnnnaggttttctcttaagagagcttagagatttttgg |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
43646039 |
agttgcttagctattgagcattatgaatcgtttctgatatggctgagatttatattttattattttaggttttctcttaagagagcttaaagatttttgg |
43645940 |
T |
|
| Q |
418 |
cgagttgcactgatgatgtccat |
440 |
Q |
| |
|
|||||||||||| |||| ||||| |
|
|
| T |
43645939 |
cgagttgcactgttgatatccat |
43645917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 305 - 440
Target Start/End: Complemental strand, 43614391 - 43614256
Alignment:
| Q |
305 |
tgtttctattagaagttgcttagctattgagcattatgaatcgtttctgatatggctgaggtttatattttannnnnnnaggttttctcttaagagagct |
404 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||||||||||| |||| ||||||||||||| ||||||||||| ||| |||||||||| ||||| |
|
|
| T |
43614391 |
tgtttccattagaagttgcttagctattgtgcattatgaattgtttttgatatggctgagatttatattttattatttaagggtttctcttaattgagct |
43614292 |
T |
|
| Q |
405 |
tagagatttttggcgagttgcactgatgatgtccat |
440 |
Q |
| |
|
||||||||||||||| |||| |||| |||| ||||| |
|
|
| T |
43614291 |
tagagatttttggcgggttgtactgttgatatccat |
43614256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University