View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18903_low_6 (Length: 415)
Name: NF18903_low_6
Description: NF18903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18903_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 1 - 396
Target Start/End: Original strand, 5643981 - 5644376
Alignment:
| Q |
1 |
tacaatattttcagcatgaaatcaaataaatgaatccaaaaacacaaacttttcaacatgaaatggaatcaaataaatgaacactaaaacacaaattttc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
5643981 |
tacaatattttcagcatgaaatcaaataaatgaatccaaaaacacaaacttttcaacatgaaatggtatcaaataaatgaacactaaaacacaaattttt |
5644080 |
T |
|
| Q |
101 |
aaaatgaaatcatacacaatgaaaacataattttcaaactgaaatcaaactaataaaccttggaacacaatattcaacatgaaatcaattaaaataaaaa |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5644081 |
aaaatgaaatcatacacaatgaaaacataattttcaaactgaaatcaaactaataaaccttggaacacaatattcaacatgaaatcaattaaaataaaaa |
5644180 |
T |
|
| Q |
201 |
cataattatcaacatcaaatcaaagatacaaacccctaaaacacaattttcaacgtaaagtcaaataaaataaacttgaaaacataattttatcaacaat |
300 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||| |
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| T |
5644181 |
cataattatcaacatcaaatcaaagatacaaacccctaaaacacaattttcaacgtaaaatcaaataaaataaactttaaaacacaattttatcaacaat |
5644280 |
T |
|
| Q |
301 |
aaatgtgataaaaataggaaccttaacataagcattatcattcagcttatatataaccccatcaacattcacttcacggtaatgaaacttcgcctt |
396 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5644281 |
aaatgtgataaaaataggaaccttaacataagcattatcattcagcttatatataaccccatcaacattcacttcacggtaatgaaacttcgcctt |
5644376 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 281 - 396
Target Start/End: Original strand, 35535369 - 35535484
Alignment:
| Q |
281 |
aacataattttatcaacaataaatgtgataaaaataggaaccttaacataagcattatcattcagcttatatataaccccatcaacattcacttcacggt |
380 |
Q |
| |
|
|||| ||||||||||||| |||||| |||||||||| |||||| ||||||||||||| || ||| |||||||||||||||||||| ||| ||||||||| |
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| T |
35535369 |
aacacaattttatcaacattaaatgatataaaaatagaaaccttgacataagcattattatccagattatatataaccccatcaactttcgcttcacggt |
35535468 |
T |
|
| Q |
381 |
aatgaaacttcgcctt |
396 |
Q |
| |
|
||||||||| |||||| |
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|
| T |
35535469 |
aatgaaactacgcctt |
35535484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 310 - 396
Target Start/End: Original strand, 31944085 - 31944171
Alignment:
| Q |
310 |
aaaaataggaaccttaacataagcattatcattcagcttatatataaccccatcaacattcacttcacggtaatgaaacttcgcctt |
396 |
Q |
| |
|
|||||||| |||||| |||||||||||||| | ||||||||| | || ||||||||| ||| |||||||||| |||||||||||||| |
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| T |
31944085 |
aaaaatagaaaccttgacataagcattatcgtccagcttatacaaaatcccatcaactttcgcttcacggtagtgaaacttcgcctt |
31944171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 311 - 396
Target Start/End: Original strand, 1342115 - 1342200
Alignment:
| Q |
311 |
aaaataggaaccttaacataagcattatcattcagcttatatataaccccatcaacattcacttcacggtaatgaaacttcgcctt |
396 |
Q |
| |
|
||||||| |||||| |||||||||||||| | ||||||||||| || ||||||||| ||| ||||| | || |||||||||||||| |
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|
| T |
1342115 |
aaaatagaaaccttgacataagcattatcctccagcttatataaaatcccatcaaccttcgcttcatgatagtgaaacttcgcctt |
1342200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 313 - 396
Target Start/End: Original strand, 9394576 - 9394659
Alignment:
| Q |
313 |
aataggaaccttaacataagcattatcattcagcttatatataaccccatcaacattcacttcacggtaatgaaacttcgcctt |
396 |
Q |
| |
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||||| |||||| |||||||||||||| | ||||||||||| || ||||||||| || |||||||||| |||||||| ||||| |
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| T |
9394576 |
aatagaaaccttgacataagcattatcctccagcttatataaaatcccatcaaccttggcttcacggtagtgaaactttgcctt |
9394659 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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