View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18903_low_8 (Length: 393)

Name: NF18903_low_8
Description: NF18903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18903_low_8
NF18903_low_8
[»] chr1 (6 HSPs)
chr1 (20-391)||(40689548-40689919)
chr1 (81-133)||(34714059-34714111)
chr1 (199-263)||(34710335-34710399)
chr1 (199-263)||(34713959-34714023)
chr1 (191-231)||(27509163-27509203)
chr1 (199-263)||(34406576-34406640)
[»] chr7 (2 HSPs)
chr7 (180-256)||(7687870-7687946)
chr7 (186-258)||(40243778-40243850)
[»] chr2 (2 HSPs)
chr2 (178-252)||(41234713-41234787)
chr2 (179-231)||(35505956-35506008)
[»] chr4 (1 HSPs)
chr4 (182-271)||(20926000-20926089)


Alignment Details
Target: chr1 (Bit Score: 360; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 20 - 391
Target Start/End: Complemental strand, 40689919 - 40689548
Alignment:
Q  20 tcatgaaccttagacttgttgttattgttgcttccaccatgtagatttcccttaccattgttattcaattgaagggaaattgatttatgattgggtttga 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  40689919 tcatgaaccttagacttgttgttattgttgcttccaccatgtagatttcccttaccattgttattcaattgaagagaaattgatttatgattgggtttga 40689820  T
Q  120 attgaaactcttgatcatcatcatataagtgctttttctcttgagcaattgctaaagcttttggtttcttgtgacttgctctatggccaccaagggcttg 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40689819 attgaaactcttgatcatcatcatataagtgctttttctcttgagcaattgctaaagcttttggtttcttgtgacttgctctatggccaccaagggcttg 40689720  T
Q  220 aaatgaagggaatgttctgttgcatgttttgcattcataaacatagaaaccagctcttccagaatccaaagtagcagcttccatgaattttctactgcta 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40689719 aaatgaagggaatgttctgttgcatgttttgcattcataaacatagaaaccagctcttccagaatccaaagtagcagcttccatgaattttctactgcta 40689620  T
Q  320 tattttgtgtagttcatcattccaccatctaaatcatcggtgttctttgttgatgattcctttgcttctcct 391  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  40689619 tattttgtgtagttcatcattccaccatctaaatcatcagtgttctttgttgatgattcctttgcttgtcct 40689548  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 81 - 133
Target Start/End: Complemental strand, 34714111 - 34714059
Alignment:
Q  81 tattcaattgaagggaaattgatttatgattgggtttgaattgaaactcttga 133  Q
    ||||||||| ||||||||||||||||| ||||| |||||||||||||||||||    
T  34714111 tattcaatttaagggaaattgatttattattggttttgaattgaaactcttga 34714059  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 199 - 263
Target Start/End: Complemental strand, 34710399 - 34710335
Alignment:
Q  199 tctatggccaccaagggcttgaaatgaagggaatgttctgttgcatgttttgcattcataaacat 263  Q
    ||||||||| ||||| |||||| |||||| ||||||| ||||||||||||||||| |||| ||||    
T  34710399 tctatggcctccaagtgcttgagatgaagtgaatgttttgttgcatgttttgcatgcatacacat 34710335  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 263
Target Start/End: Complemental strand, 34714023 - 34713959
Alignment:
Q  199 tctatggccaccaagggcttgaaatgaagggaatgttctgttgcatgttttgcattcataaacat 263  Q
    ||||||||| ||||| ||||||||||||| ||| ||| | ||||||||||||||| |||| ||||    
T  34714023 tctatggcctccaagtgcttgaaatgaagtgaaagtttttttgcatgttttgcatgcatacacat 34713959  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 191 - 231
Target Start/End: Original strand, 27509163 - 27509203
Alignment:
Q  191 tgacttgctctatggccaccaagggcttgaaatgaagggaa 231  Q
    |||||||||||||| |||||||| ||||| |||||||||||    
T  27509163 tgacttgctctatgtccaccaagtgcttggaatgaagggaa 27509203  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 263
Target Start/End: Original strand, 34406576 - 34406640
Alignment:
Q  199 tctatggccaccaagggcttgaaatgaagggaatgttctgttgcatgttttgcattcataaacat 263  Q
    ||||||||| ||||| ||||||||||||| ||| | | |||| |||||||||||| |||| ||||    
T  34406576 tctatggcctccaagtgcttgaaatgaagtgaaagatttgttacatgttttgcatgcatacacat 34406640  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 180 - 256
Target Start/End: Original strand, 7687870 - 7687946
Alignment:
Q  180 ttggtttcttgtgacttgctctatggccaccaagggcttgaaatgaagggaatgttctgttgcatgttttgcattca 256  Q
    ||||||||||||||||||| ||||| ||||| ||||||||||||||||| |||  ||| || |||||||| ||||||    
T  7687870 ttggtttcttgtgacttgccctatgaccacctagggcttgaaatgaaggaaattgtctattacatgttttacattca 7687946  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 186 - 258
Target Start/End: Original strand, 40243778 - 40243850
Alignment:
Q  186 tcttgtgacttgctctatggccaccaagggcttgaaatgaagggaatgttctgttgcatgttttgcattcata 258  Q
    ||||||| || || ||||||||||||||||||||||| || | |||| || ||||||| ||||||||||||||    
T  40243778 tcttgtggctagccctatggccaccaagggcttgaaaagatgagaattttttgttgcacgttttgcattcata 40243850  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 178 - 252
Target Start/End: Complemental strand, 41234787 - 41234713
Alignment:
Q  178 ttttggtttcttgtgacttgctctatggccaccaagggcttgaaatgaagggaatgttctgttgcatgttttgca 252  Q
    ||||||| ||||||||||||||||||||||||| |  |||||||| |||| ||||  | ||||||||||||||||    
T  41234787 ttttggtctcttgtgacttgctctatggccacctaaagcttgaaaagaagagaattctttgttgcatgttttgca 41234713  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 231
Target Start/End: Complemental strand, 35506008 - 35505956
Alignment:
Q  179 tttggtttcttgtgacttgctctatggccaccaagggcttgaaatgaagggaa 231  Q
    |||||||||||||||||||||||||| ||||| |  |||||||||||| ||||    
T  35506008 tttggtttcttgtgacttgctctatgtccacccaacgcttgaaatgaatggaa 35505956  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 271
Target Start/End: Original strand, 20926000 - 20926089
Alignment:
Q  182 ggtttcttgtgacttgctctatggccaccaagggcttgaaatgaagggaatgttctgttgcatgttttgcattcataaacatagaaacca 271  Q
    ||||| ||||||||||| || || ||||| |  |||||||| ||||| || |||||||| ||||||||||||||||||| ||| ||||||    
T  20926000 ggttttttgtgacttgccctgtgaccacccaaagcttgaaaagaaggaaaagttctgttacatgttttgcattcataaatatacaaacca 20926089  T

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