View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18904_low_2 (Length: 432)
Name: NF18904_low_2
Description: NF18904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18904_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 45 - 421
Target Start/End: Original strand, 14170761 - 14171140
Alignment:
| Q |
45 |
acaaagcaacgaggtcgaggatg---atcaagtcacaatggtcagtcttaaaacacggagctaacatgtttggctccatatatgaatcttgcctcaccat |
141 |
Q |
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| T |
14170761 |
acaaagcaacgaggtcgaggatgatgatcaagtcacaatggtcactcttaaaacacggagctaacatgtttggctccatatatgaatcttgcctcaccat |
14170860 |
T |
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| Q |
142 |
tactgttcctttctcacattctttcacatctctttgttcattttactacttataatcttcaaaattcacattttacggggacaaagaaaattgcttcttt |
241 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
14170861 |
tactgttcctttctcacattctttcacatctctttgttcattttactactaataatcttcaaaattcacattttaaggggacaaagaaaattgcttcttt |
14170960 |
T |
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| Q |
242 |
tacagtacaaaatcattgattccctcgttcaaattgattcgttcctatgtcacattgtaggattttccaccacattctcaaacgctgtaaagcttctaag |
341 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14170961 |
tacattacaaaatcattgattccctcgttcaaattgattcgttcctatgtcacattgtaggattttccaccacattctcaaacgctgtaaagcttctaag |
14171060 |
T |
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| Q |
342 |
aattccaaaaccgttgctaaaactcacgcaaggatcattatacttggttatgccacatacccatctcttgtagcatctct |
421 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14171061 |
aattccaaaaccgttgctaaaactcacgcaaggatcattatacttggttatgccacatacccatctcttgtagcatctct |
14171140 |
T |
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