View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18904_low_3 (Length: 380)
Name: NF18904_low_3
Description: NF18904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18904_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 134; Significance: 1e-69; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 14 - 224
Target Start/End: Original strand, 37306148 - 37306345
Alignment:
| Q |
14 |
agaaaatatgggacaattctataaactatgagaaggcaagcaacataatgctctaacaatacgataaactaatttatttgttactctacacaaatcctac |
113 |
Q |
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| T |
37306148 |
agaaaatatgggacaatactataaactatgagaaggcaagcaacataatgctctaacaatacgataaactaatttatttgttactctagacaaatcctac |
37306247 |
T |
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| Q |
114 |
aacatagttatgaggagataagagactttcaccacgggatatatataatgtcactataagagagataagctgaaataacctttttaaataaccacaaact |
213 |
Q |
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| T |
37306248 |
aacatagttatgaggaga---------ttcaccacggg----atataatgtcacattaagagagataagctgaaataacttttttaaataaccagaaagt |
37306334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 206 - 361
Target Start/End: Original strand, 37306363 - 37306514
Alignment:
| Q |
206 |
cacaaactaaatgtttattcatgcagtttcgggaagaattaaattattagactccaaagtatattattaatcttattctacccaaactaatgaatggtaa |
305 |
Q |
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| T |
37306363 |
cacaaactacatgtttattcatacagtttcgggaagaattcaattattagactacaaagtatattattaatcttattctacccaaact----aatggtaa |
37306458 |
T |
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| Q |
306 |
attaataatggaacgcgaatacatcatattccacaacagcatttccagtggcaaaa |
361 |
Q |
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| T |
37306459 |
attaataatggaacgcgaatacatcatattccacaacagcatttccagtggcaaaa |
37306514 |
T |
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