View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18904_low_4 (Length: 365)
Name: NF18904_low_4
Description: NF18904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18904_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 317; Significance: 1e-179; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 12356022 - 12355678
Alignment:
| Q |
1 |
gagtcctatgttttcaatgaccctcacttcagcctagtttgtgattttatcaagattgaaagttcgtgatttctgactctttctttgggtacaaaaattg |
100 |
Q |
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| T |
12356022 |
gagtcctatgttttcaatgaccctcacttcagcctagtttgtgattttctcaagattgaaagttcgtgatttctgactctttctttgggtacaaaaattg |
12355923 |
T |
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| Q |
101 |
cacagtggaggtgatgtttcaaatgttttcttccctgtgaaaaattcaaggagggaaaatgatttagattcagatgaggtagcttaatcattttagattt |
200 |
Q |
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| T |
12355922 |
cacagtggaggtgatgtttcaaatgttttcttccctgtgaaaaattcaaggagggaaaatgatttagattcagatgaggtagcttaatcattttagattt |
12355823 |
T |
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| Q |
201 |
agagtccaatttagttctttcattggcaaaactttattaatacaaagagatgtttactgcaactgaaaatacagtataattttggtcttccatatccttg |
300 |
Q |
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| T |
12355822 |
agagtccaatttggttctttcattggcaaaactttattaatacaaagagatgtttactgcaactgaaaatacggtacaattttggtcttacatatccttg |
12355723 |
T |
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| Q |
301 |
aagaaaaaacgattcaatcctagtatcaagtgaggaacatgcacc |
345 |
Q |
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| T |
12355722 |
aagaaaaaacgtttcaattctagtatcaagtgaggaacatgcacc |
12355678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 279 - 345
Target Start/End: Original strand, 12738745 - 12738811
Alignment:
| Q |
279 |
attttggtcttccatatccttgaagaaaaaacgattcaatcctagtatcaagtgaggaacatgcacc |
345 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12738745 |
attttggtcttccatatccttgaagaaaaaacgattcaatcctagtatcaagtgaggaacatgcacc |
12738811 |
T |
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