View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18904_low_5 (Length: 250)
Name: NF18904_low_5
Description: NF18904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18904_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 12 - 232
Target Start/End: Original strand, 4695647 - 4695862
Alignment:
| Q |
12 |
agtagcataggaaaataaatattaaagtatatggtttgaggatttagaagagaaagggaggtgatgacttacccttttataataaatatattatataacc |
111 |
Q |
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| T |
4695647 |
agtatcataggaaaataaatattaaagtatatggtttgacgatttagaagagaaagggaggtgatgacttacccttttataata----tattatataacc |
4695742 |
T |
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| Q |
112 |
atgtacaataaaataaatctataatgaagtgtaatggaaaagcggaacatgttcgtcttgatgctactctataaaatatatctatattagggttgtacaa |
211 |
Q |
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| T |
4695743 |
atgtacaataaaataaatctataatgaagtgtaatggaaaagcggaacatgtccgtcttgatgctactctat-aaatatatctatattaggattgtacaa |
4695841 |
T |
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| Q |
212 |
gggacaaactagccatgttgt |
232 |
Q |
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||||| ||||||| ||||||| |
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| T |
4695842 |
gggacgaactagctatgttgt |
4695862 |
T |
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