View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18905_high_10 (Length: 214)
Name: NF18905_high_10
Description: NF18905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18905_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 52512607 - 52512413
Alignment:
| Q |
1 |
ctcgatgccttcctccaacttccatcaaacaaacaggaaggacgcgttgttttattgttaaatccactcttcctcaaaatcaaggatatcattcttcctc |
100 |
Q |
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| T |
52512607 |
ctcgatgccttcctccaacttccatcaaacaaacaggaaggacgcgttgttttattgttaaatccactcttcctcaaaatcaaggatatcattcttcctc |
52512508 |
T |
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| Q |
101 |
caaggtatgtatgtatgtttatatacgagtttcaattcaatttcaatt----acccactcactcatcattaacttaattaattgcattcatatag |
191 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
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| T |
52512507 |
caaggtatgtatgtatgtttatatatgagtttcaattcaatttcaattactcactcactcactcatcattaacttaattaattgcattcatatag |
52512413 |
T |
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