View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18905_high_2 (Length: 553)
Name: NF18905_high_2
Description: NF18905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18905_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 16 - 429
Target Start/End: Original strand, 18714988 - 18715401
Alignment:
| Q |
16 |
ataccatccaaccactgataa-tccaaacaaatgtatcattctttttaattcaatggtcctttatgttatttaattatattagattgtcatttatcattc |
114 |
Q |
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| T |
18714988 |
ataccatccaaccactgatcagtccaaacaaatgtatcattctttttaattcaatggtcctttatgttatttaattatattagattgtcttttatcattc |
18715087 |
T |
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| Q |
115 |
ttttttctcatgtgcgtcttttat-attacaaacacgcacaagtttatctctttatgttttttcttcatttttattagaaaactgatga---ggtggtaa |
210 |
Q |
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| T |
18715088 |
ttttttctcatgtgtgtcttttatcattacaaacacgcacaagtttatctctttatgttttttcttcatttttattagaaaactgatgaggtggtggtaa |
18715187 |
T |
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| Q |
211 |
gtcacataggataatttgttacagnnnnnnnatgttgaaagtaataaaacccataactatcctacataaattaacatcagacaatcgagttgaaacctga |
310 |
Q |
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| T |
18715188 |
gtcacataggatagtttgctataatttttttatgttgaaagtaataaaacccataactatcctacataaattgacatcagacaattgaattaaaacttga |
18715287 |
T |
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| Q |
311 |
ggagaagtacactctaagatttcaaaccaac---actgagacaatcaaagtgagtttgtttatggaataaaattgattgattattcgattatctttttta |
407 |
Q |
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| T |
18715288 |
ggaggaatacaatctaagatttcaaaccaacactactgagacaatcaaagtgagtttgtttatggaataaa--------attactcgattatctttttta |
18715379 |
T |
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| Q |
408 |
atgtgtatgtttccttcaatcg |
429 |
Q |
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| T |
18715380 |
atgtgtatgtttccttcaatcg |
18715401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 483 - 536
Target Start/End: Original strand, 18715455 - 18715508
Alignment:
| Q |
483 |
tctgattgaacaagttcatatcttagacagaactcaggaacagaacaaccaaaa |
536 |
Q |
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| T |
18715455 |
tctgattgaacaagttcatatcttagacagaactcaggaacagaacaaccaaaa |
18715508 |
T |
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