View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18905_high_4 (Length: 514)
Name: NF18905_high_4
Description: NF18905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18905_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 373; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 5 - 500
Target Start/End: Original strand, 36770998 - 36771498
Alignment:
| Q |
5 |
gagaagcatagggtttgctggaatcctaaaaagtgaaataattcaattgttgacaatgacgtttattatactaaatacatggtcattggtcagtgattag |
104 |
Q |
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| T |
36770998 |
gagaaacatagggtttgctggaatcctaaaaagtgaaataattcaattgttgacaatgatgtttattatactaaatacatggtcattggtcagtgattag |
36771097 |
T |
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| Q |
105 |
ttaaaaagatcaagtgagcacaaaattttcctatggttgtgaatataataataatagagaatactgtattatagtatatgcttaataagcaagaatgata |
204 |
Q |
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| T |
36771098 |
ttaataagatcaagtgagcacaaaattttcctatggttgtgaatataa---taatagagaatactgtattatagtatatgcttaataagcaagaatgata |
36771194 |
T |
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| Q |
205 |
gctgagttgttatccatttcattcttataatttattgttataaagtgaagaatttgaaaaacgaaatgcagattcccataatctaaaattttatgacgag |
304 |
Q |
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| T |
36771195 |
gctgagttgttatccatttcattcttataatttattgttataaagtgaagaacttgaaaaacgaaatgcagattcccataatgtcaaattttatgacgag |
36771294 |
T |
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| Q |
305 |
gcaactccaaatccatccattgcattgtatacaaactacaaagtacnnnnnnnatatagaagaatataaaattaattaaattaaattatgttgtgta--- |
401 |
Q |
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| T |
36771295 |
gcaactccaaatccatccattgcattgtatacaaactacaaagtactttttttatatagaagaatataaaattaattaaattaaattatgttgtgtatgt |
36771394 |
T |
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| Q |
402 |
-----------taacaaagctatatatgcacaagccctaggaagagaaccacaccatggtgctataatttatgctttccaacttatccacactaattagt |
490 |
Q |
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| T |
36771395 |
cttcgtgagcttaacaaagctatatat------gccttaggaagagaaccacaccatggtgctataatttatgctttccaacttgtccacactaattagt |
36771488 |
T |
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| Q |
491 |
tttagttttg |
500 |
Q |
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| T |
36771489 |
tttagttttg |
36771498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 34 - 89
Target Start/End: Original strand, 36783564 - 36783619
Alignment:
| Q |
34 |
aaagtgaaataattcaattgttgacaatgacgtttattatactaaatacatggtca |
89 |
Q |
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| T |
36783564 |
aaagttaaatgattcaattgttgacaatgatgtttattatgctaaatacatggtca |
36783619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 329
Target Start/End: Original strand, 36791939 - 36791980
Alignment:
| Q |
288 |
taaaattttatgacgaggcaactccaaatccatccattgcat |
329 |
Q |
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| T |
36791939 |
taaaattttatgacgaggcaactgtaaatccatccgttgcat |
36791980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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