View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18905_low_1 (Length: 733)
Name: NF18905_low_1
Description: NF18905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18905_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 377; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 17 - 471
Target Start/End: Original strand, 4359926 - 4360380
Alignment:
| Q |
17 |
catgtttttgtctatcaagttgctgaaatggtgcaaattgaatttagggttgtctaatattttggggtgtagtttaatatgtttgttttcaagtttatag |
116 |
Q |
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| T |
4359926 |
catgtttttgtctatcaagttgctgaaatggtgcaaattgaatttagggttgtctaatattttggggtgtagtttaatatgtttgttttcaagtttatag |
4360025 |
T |
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| Q |
117 |
aagtttagtttgacagacttattcttttatttcatgttgaaacatatcatttcatgtggccatagattattataggttttcattattgatatgtatggca |
216 |
Q |
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| T |
4360026 |
aagtttagtttgacagacttattcttttatttcatgtagaaacatatcatttcatgtggccatagattattataggttttcattattgatatgtatggca |
4360125 |
T |
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| Q |
217 |
ctaattaatagttcattttctatctgtctaattttaatttaatttttagatttgaaattatgattccttactacttagtgtgtgaatcat-cgatttttg |
315 |
Q |
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| T |
4360126 |
ctaattaatagttcattttctatctgtctaattttaatttaatttttagatttgaaactatgattccttactacttagtgtgtgaatcatccgatttttg |
4360225 |
T |
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| Q |
316 |
tnnnnnnnnnnnttgtgttatcgttgttaccgtaatagttatggttgtaaatcaaagataaagttactcgagcatct--gcgctgaggattcgttttcgt |
413 |
Q |
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| T |
4360226 |
t--aaaaaaaaattgtggtatcgttgttaccgtaatagttatggttgtaaatcaaagataaagttactcgagcatctgcgcgctgagg-tacgttttcgt |
4360322 |
T |
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| Q |
414 |
aaatatggctactcaagcgaaggttaaattttaaatcttgtgtgctattaagaacatt |
471 |
Q |
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| T |
4360323 |
aaatatggctactcaagcgaaggttaaattttaaatcttgtgtgctattaagaacatt |
4360380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 150; E-Value: 6e-79
Query Start/End: Original strand, 565 - 722
Target Start/End: Original strand, 4360474 - 4360631
Alignment:
| Q |
565 |
tcttaaacaaagttatggaataaactcatgaatgacaattcgataatcataataagtgctcaacaaataatttagtttgactatccctgaaaatgacaac |
664 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
4360474 |
tcttaaacaaagttatggaataaactcatgaaggacaattcgataatcataataagtgctcaacaaataatttagtttgactatccctgaaaatgataac |
4360573 |
T |
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| Q |
665 |
aaacaaaatagagttgttagaagacatagcaaacgtgctcaattatttaactgatgat |
722 |
Q |
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| T |
4360574 |
aaacaaaatagagttgttagaagacatagcaaacgtgctcaattatttaactgatgat |
4360631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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