View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18905_low_13 (Length: 236)
Name: NF18905_low_13
Description: NF18905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18905_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 56; Significance: 2e-23; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 148 - 211
Target Start/End: Original strand, 22714054 - 22714117
Alignment:
| Q |
148 |
ttcataccaacactagttttttcctaagcgacatgtgtttattctttccaacttccactcaaat |
211 |
Q |
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| T |
22714054 |
ttcataccaacactagttctttcctaagggacatgtgtttattctttccaacttccactcaaat |
22714117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 155 - 210
Target Start/End: Complemental strand, 35160419 - 35160364
Alignment:
| Q |
155 |
caacactagttttttcctaagcgacatgtgtttattctttccaacttccactcaaa |
210 |
Q |
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|||||||| || ||||||||| ||||||||||||||||| |||||||||||||||| |
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| T |
35160419 |
caacactaattctttcctaagggacatgtgtttattcttgccaacttccactcaaa |
35160364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 164 - 210
Target Start/End: Original strand, 33319323 - 33319369
Alignment:
| Q |
164 |
ttttttcctaagcgacatgtgtttattctttccaacttccactcaaa |
210 |
Q |
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|||||||||||| ||||||||||||||||| |||||||||||||||| |
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| T |
33319323 |
ttttttcctaagggacatgtgtttattcttgccaacttccactcaaa |
33319369 |
T |
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Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 148 - 214
Target Start/End: Complemental strand, 7874439 - 7874373
Alignment:
| Q |
148 |
ttcataccaacactagttttttcctaagcgacatgtgtttattctttccaacttccactcaaattca |
214 |
Q |
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||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||| |
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| T |
7874439 |
ttcataccaacactagttttttcttaagggacatgtgcatattctttccaacttccactcaaattca |
7874373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 148 - 215
Target Start/End: Original strand, 3267865 - 3267932
Alignment:
| Q |
148 |
ttcataccaacactagttttttcctaagcgacatgtgtttattctttccaacttccactcaaattcaa |
215 |
Q |
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| T |
3267865 |
ttcatgccaacactagttctttcctaaggaatatgcgtttattctttccaacttccactcaaattcaa |
3267932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 211
Target Start/End: Complemental strand, 39080211 - 39080182
Alignment:
| Q |
182 |
gtgtttattctttccaacttccactcaaat |
211 |
Q |
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| T |
39080211 |
gtgtttattctttccaacttccactcaaat |
39080182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 215
Target Start/End: Original strand, 39543559 - 39543625
Alignment:
| Q |
148 |
ttcataccaacactagttttttcctaagcgacatgtgtttattctttccaacttccactcaaattcaa |
215 |
Q |
| |
|
|||||||||||| ||||| ||||||||| ||||||||||||||||| |||||| |||||||| |||| |
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| T |
39543559 |
ttcataccaacattagttctttcctaaggaacatgtgtttattcttt-caactttcactcaaactcaa |
39543625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 214
Target Start/End: Original strand, 5771556 - 5771617
Alignment:
| Q |
148 |
ttcataccaacactagttttttcctaagcgacatgtgtttattctttccaacttccactcaaattca |
214 |
Q |
| |
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|||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||| |
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| T |
5771556 |
ttcataccaacactagtt-----ctaagaaacatgtgtttattctttccaacttccatccaaattca |
5771617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 208
Target Start/End: Original strand, 26707579 - 26707635
Alignment:
| Q |
151 |
ataccaacactagttttttcctaagcgacatgtgtttattctttccaacttccactca |
208 |
Q |
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||||||||||||||| |||||||| ||| |||||||| || |||||||||||||||| |
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| T |
26707579 |
ataccaacactagttctttcctaatggacgtgtgtttactc-ttccaacttccactca |
26707635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 45161688 - 45161727
Alignment:
| Q |
2 |
tttttgactcaagtccagtcggatggacggcgtcacgcgtg |
42 |
Q |
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||||||||||||||| |||||||| |||||||||||||||| |
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| T |
45161688 |
tttttgactcaagtctagtcggat-gacggcgtcacgcgtg |
45161727 |
T |
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