View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18905_low_14 (Length: 234)
Name: NF18905_low_14
Description: NF18905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18905_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 10 - 216
Target Start/End: Original strand, 32612462 - 32612668
Alignment:
| Q |
10 |
ggatcagagaaacaacgaaaggaagatttatgtttgaaataagttacaaaattgcaaacttaaagcaacacacatgtctgttcactgcaacacacattgt |
109 |
Q |
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| T |
32612462 |
ggatcacaaaaacaacgaaaggaagatttatgtttgaaataagttacaaaattccaaacttaaagcaacacacatgtctgttcactgcaacacacattgt |
32612561 |
T |
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| Q |
110 |
atataaatttaaaacatagaaacaatgcatgattttgtcattcacagcagtgattcaatgtcttcccttagcgaacgaacaccgcgcaattgattcacca |
209 |
Q |
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| T |
32612562 |
gtataaatttaaaacatagaaacagtgcatgattttgtcattcacagcagtgattcaatgtcttcccttagcgaacgaacacctcgcaattgattcacca |
32612661 |
T |
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| Q |
210 |
gcttcat |
216 |
Q |
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| T |
32612662 |
gcttcat |
32612668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 19 - 213
Target Start/End: Original strand, 32643779 - 32643964
Alignment:
| Q |
19 |
aaacaacgaaaggaagatttatgtttgaaataagttacaaaattgcaaacttaaa--gcaacacacatgtctgttcactgcaacacacattgtatataaa |
116 |
Q |
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||||||| |||||| | |||||||||||||| |||||| |||| |||||||||| ||||||||||||||||||| ||| |||||| |
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| T |
32643779 |
aaacaacaaaaggagtaattatgtttgaaatatgttacagaatttcaaacttaaatagcaacacacatgtctgttcg------------ttgagtataaa |
32643866 |
T |
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| Q |
117 |
tttaaaacatagaaa-caatgcatgattttgtcattcacagcagtgattcaatgtcttcccttagcgaacgaacaccgcgcaattgattcaccagctt |
213 |
Q |
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||| |||| |||||| || |||||||| |||||| ||||| | ||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
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| T |
32643867 |
tttgaaacttagaaaacagtgcatgatattgtcaatcacaacggtgattcaatgtcttcccttagcgaacgaacactgtgcaattgattcaccagctt |
32643964 |
T |
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