View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18905_low_15 (Length: 218)
Name: NF18905_low_15
Description: NF18905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18905_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 8 - 205
Target Start/End: Complemental strand, 34796739 - 34796542
Alignment:
| Q |
8 |
gacatcatcaacacgacagaacacatgagaaggaatattatccgaaaaagataacggaaaatcatgaagatgttccaagtgtccttgagggaagtaaaca |
107 |
Q |
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| T |
34796739 |
gacatcaacaacacgacagaacacatgagaaggaatattatccgaaaaagataacggaaaatcatgaagatgttccaagtgtccttgagggaagtaaaca |
34796640 |
T |
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| Q |
108 |
acaacacttcctttctttggcaaagagatcataggaccagcacaagcatgccatagctccaaacacacagaagaagcagcaccaacactacctatgct |
205 |
Q |
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| T |
34796639 |
acaacacttcctttctttggcaaagagatcataggaccagcacaagcatgccatagctccaaacacacagaagaaccagcaccaacactacctatgct |
34796542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 162
Target Start/End: Complemental strand, 22234680 - 22234596
Alignment:
| Q |
78 |
tgttccaagtgtccttgagggaagtaaacaacaacacttcctttctttggcaaagagatcataggaccagcacaagcatgccata |
162 |
Q |
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| T |
22234680 |
tgttccaagtgaccttgtggaaaatacaccacaacatttcctttcttaggaagtgaggtaagaggaccagcacaagcatgccata |
22234596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 63 - 179
Target Start/End: Original strand, 4274417 - 4274533
Alignment:
| Q |
63 |
ggaaaatcatgaagatgttccaagtgtccttgagggaagtaaacaacaacacttcctttctttggcaaagagatcataggaccagcacaagcatgccata |
162 |
Q |
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| T |
4274417 |
ggaaaatcatgagcttgttcaaagtgtccttgtggaacataaacaacaatgcttcctttctttggtaaagagatcaaaggaccagcacaagcatgccata |
4274516 |
T |
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| Q |
163 |
gctccaaacacacagaa |
179 |
Q |
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| T |
4274517 |
gctccaaacaaacagaa |
4274533 |
T |
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