View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18905_low_3 (Length: 519)
Name: NF18905_low_3
Description: NF18905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18905_low_3 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 348; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 18 - 509
Target Start/End: Original strand, 45270607 - 45271113
Alignment:
| Q |
18 |
caacccaccaaagcagacatatctccttggtttctaaatgccacagcttggtgaccagcaggaccggctgtgttctcaaatgtcattgcctttccaatga |
117 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45270607 |
caacccaccaaagcagacatatctcctatgtttctaaatgccacagcttgcataccggcaggaccggctgtgttctcaaatgtcattgcctttccaatga |
45270706 |
T |
|
| Q |
118 |
accccattgcggtgttggctgcatgcatggatgatcaattaattagtaacttcgatcacaccggctatatatat------------------atcttttc |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||| |
|
|
| T |
45270707 |
accccattgcggtgttggctgcatgcatggatgatcaattaattagtaacttctataacaccggctatatatatgtatgtgtctatatatatatcttttc |
45270806 |
T |
|
| Q |
200 |
aatgtgagttaatgttttcttcataaatgaattttgagagtgatgctactatttcacatctactctctcttcattcataaggtacacaattaattaaata |
299 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45270807 |
aatgtgagttaatgtttttttcaaaaatgaattttgagagtgatgctactatttcacatctactctctcttcattcataaggtacacaattaattaaata |
45270906 |
T |
|
| Q |
300 |
aaataaaaaagctttgatcgataataactgaattacgtaccaaagggggcactgttctgtatattggtaccggcgttttggttcttactaccagtgacaa |
399 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||||||||| ||||| |||| |||||||| | ||||||||||| |||||||||| ||||||||||||| |
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|
| T |
45270907 |
aaataaaa--gctttgatcgata-taactgaattacgtacaaaaggtggcagtgttctgtgtgttggtaccggccatttggttctttctaccagtgacaa |
45271003 |
T |
|
| Q |
400 |
tggtttttgcagggccatcaccatacataagaatgttaacagcatccttggggacagtgatgtattcgtcatagacaccggccttaacgtagataacata |
499 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45271004 |
tggtctttgcagggccatcaccatacataagaatgttaacagcctccttggggacagtgatgtattcgtcatagacaccggccttaacgtagataacata |
45271103 |
T |
|
| Q |
500 |
tctgcctttg |
509 |
Q |
| |
|
|||| ||||| |
|
|
| T |
45271104 |
tctgtctttg |
45271113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 18 - 509
Target Start/End: Original strand, 45282377 - 45282887
Alignment:
| Q |
18 |
caacccaccaaagcagacatatctccttggtttctaaatgccacagcttggtgaccagcaggaccggctgtgttctcaaatgtcattgcctttccaatga |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45282377 |
caacccaccaaagcagacatatctccttggtttctaaatgccacagcttggtgaccatcaggaccggctgtgttctcaaatgtcattgcctttccaatga |
45282476 |
T |
|
| Q |
118 |
accccattgcggtgttggctgcatgcatggatgatcaattaattagtaacttcgatcacaccggctatata---------------------tatatctt |
196 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||| ||||||||| |||||||| |
|
|
| T |
45282477 |
accccattgcggtgttggctgcattcatggataatcaattaattagtaatttcgatcacattggctatatatgtcaatgttatatgtgtatctatatctt |
45282576 |
T |
|
| Q |
197 |
ttcaatgtgagttaatgttttcttcataaatgaattttgagagtgatgctactatttcacatctactctctcttcattcataaggtacacaattaattaa |
296 |
Q |
| |
|
|||||||| |||| |||||||||||| |||||||||||||||||||||| ||| |||| ||| |||||| ||||||||||||| ||| | |||||||||| |
|
|
| T |
45282577 |
ttcaatgttagtt-atgttttcttcaaaaatgaattttgagagtgatgccactttttctcatatactctttcttcattcataa-gtaaataattaattaa |
45282674 |
T |
|
| Q |
297 |
ataaaataaaaaagctttgatcgataataactgaattacgtaccaaagggggcactgttctgtatattggtaccggcgttttggttcttactaccagtga |
396 |
Q |
| |
|
|||||||||||||| |||||||||| |||| ||||||| ||||| |||| ||| | | | | ||| ||| || | |||| |||||||||| |
|
|
| T |
45282675 |
ataaaataaaaaagttttgatcgatgataattgaattaagtaccgaaggtggcggtttgcatggtcttgacaccagcagcaaagctctttctaccagtga |
45282774 |
T |
|
| Q |
397 |
caatggtttttgcagggccatcaccatacataagaatgttaacagcatccttggggacagtgatgtattcgtcatagacaccggccttaacgtagataac |
496 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45282775 |
caatggtccttgcagggccatcaccatacataagaatgttaacagcatccttggggacagtgatgtattcgtcatagacaccggccttaacgtagataac |
45282874 |
T |
|
| Q |
497 |
atatctgcctttg |
509 |
Q |
| |
|
||||||||||||| |
|
|
| T |
45282875 |
atatctgcctttg |
45282887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 18 - 509
Target Start/End: Original strand, 45274134 - 45274646
Alignment:
| Q |
18 |
caacccaccaaagcagacatatctccttggtttctaaatgccacagcttggtgaccagcaggaccggctgtgttctcaaatgtcattgcctttccaatga |
117 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45274134 |
caacccaccaaagcagacatatctcctacgtttctaaatgccacagcttggtgaccatcaggaccggctgtgttctcaaatgtcattgcctttccaatga |
45274233 |
T |
|
| Q |
118 |
accccattgcggtgttggctgcatgcatggatgatcaattaattagtaacttcgatcacaccggctatata---------tata------------tctt |
196 |
Q |
| |
|
|||| |||||||||||||||||| |||||||| |||||||||||||||| ||||||||||| ||||||||| |||| |||| |
|
|
| T |
45274234 |
accctattgcggtgttggctgcacgcatggataatcaattaattagtaatttcgatcacactggctatatatgtcaatgttatatgtatatatttctctt |
45274333 |
T |
|
| Q |
197 |
ttcaatgtgagttaatgttttcttcataaatgaattttgagagtgatgctactatttcacatctactctctcttcattcataaggtacacaattaattaa |
296 |
Q |
| |
|
||||||| ||||| |||||||||||| |||| ||||||||||||||||||||| |||| || |||||| |||||| |||||||||| ||||||||| || |
|
|
| T |
45274334 |
ttcaatgcgagtt-atgttttcttcaaaaataaattttgagagtgatgctactttttcttatatactctttcttcaatcataaggtatacaattaatcaa |
45274432 |
T |
|
| Q |
297 |
ataaaat-aaaaaagctttgatcgataataactgaattacgtaccaaagggggcactgttctgtatattggtaccggcgttttggttcttactaccagtg |
395 |
Q |
| |
|
||||||| |||||||||||||| |||||||| ||||||||||||| |||| ||| | | | | ||||||||||| |||||| ||||| ||| |
|
|
| T |
45274433 |
ataaaataaaaaaagctttgatagataataattgaattacgtaccgaaggtggcggtttgcatggtcttggtaccggcagcaaagttctttctaccggtg |
45274532 |
T |
|
| Q |
396 |
acaatggtttttgcagggccatcaccatacataagaatgttaacagcatccttggggacagtgatgtattcgtcatagacaccggccttaacgtagataa |
495 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
45274533 |
acaatggtccttgcagggccatcaccatacataagaatgttaacagcatccttgggtacagtgatgtattcgtcatagacaccagccttaacgtagataa |
45274632 |
T |
|
| Q |
496 |
catatctgcctttg |
509 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
45274633 |
aatacctgcctttg |
45274646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 18 - 185
Target Start/End: Original strand, 45293717 - 45293884
Alignment:
| Q |
18 |
caacccaccaaagcagacatatctccttggtttctaaatgccacagcttggtgaccagcaggaccggctgtgttctcaaatgtcattgcctttccaatga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45293717 |
caacccaccaaagcagacatatctccttggtttctaaatgccacagcttggtgaccagcaggaccggctgtgttctcaaatgtcattgcctttccaatga |
45293816 |
T |
|
| Q |
118 |
accccattgcggtgttggctgcatgcatggatgatcaattaattagtaacttcgatcacaccggctat |
185 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45293817 |
accccaatgcggtgttggctgcatgcatggatgatcaattaattagtaacttcgatcacaccggctat |
45293884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 18 - 185
Target Start/End: Original strand, 45302677 - 45302844
Alignment:
| Q |
18 |
caacccaccaaagcagacatatctccttggtttctaaatgccacagcttggtgaccagcaggaccggctgtgttctcaaatgtcattgcctttccaatga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45302677 |
caacccaccaaagcagacatatctccttggtttctaaatgccacagcttggtgaccagcaggaccggctgtgttctcaaatgtcattgcctttccaatga |
45302776 |
T |
|
| Q |
118 |
accccattgcggtgttggctgcatgcatggatgatcaattaattagtaacttcgatcacaccggctat |
185 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45302777 |
accccaatgcggtgttggctgcatgcatggatgatcaattaattagtaacttcgatcacaccggctat |
45302844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 183 - 509
Target Start/End: Original strand, 45293948 - 45294275
Alignment:
| Q |
183 |
tatatatatatcttttcaatgtgagttaatgttttcttcataaatgaattttgagagtgatgctactatttcacatc--tactctctcttcattcataag |
280 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||| |||| ||| || |||||||||||||| |
|
|
| T |
45293948 |
tatatataaatcttttcaatgtgagtta-tgttttcttcaaaaatgaattttgagagtgatgttactatttctcatcattaccctttcttcattcataag |
45294046 |
T |
|
| Q |
281 |
gtacacaattaattaaataaaataaaaaagctttgatcgataataactgaattacgtaccaaagggggcactgttctgtatattggtaccggcgttttgg |
380 |
Q |
| |
|
|||||||||| ||||||||||||||||||| | |||||||| |||| |||||||| |||| |||| ||| | | | | ||| ||| || | |
|
|
| T |
45294047 |
gtacacaatttattaaataaaataaaaaagttgtgatcgatgataattgaattacttaccgaaggtggcggtttgcatggtcttgacaccagcagcaccg |
45294146 |
T |
|
| Q |
381 |
ttcttactaccagtgacaatggtttttgcagggccatcaccatacataagaatgttaacagcatccttggggacagtgatgtattcgtcatagacaccgg |
480 |
Q |
| |
|
||||| || || || |||||||| ||| | |||||||||||||||||||||||||||||||| || ||||| | |||||||||||| |||||||| || | |
|
|
| T |
45294147 |
ttctttcttccggtaacaatggtctttccggggccatcaccatacataagaatgttaacagcgtctttgggaatagtgatgtattcatcatagacgccag |
45294246 |
T |
|
| Q |
481 |
ccttaacgtagataacatatctgcctttg |
509 |
Q |
| |
|
|||||||||||||| ||||||||||||| |
|
|
| T |
45294247 |
ccttaacgtagatagtatatctgcctttg |
45294275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 183 - 509
Target Start/End: Original strand, 45302908 - 45303235
Alignment:
| Q |
183 |
tatatatatatcttttcaatgtgagttaatgttttcttcataaatgaattttgagagtgatgctactatttcacatc--tactctctcttcattcataag |
280 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||| |||| ||| || |||||||||||||| |
|
|
| T |
45302908 |
tatatataaatcttttcaatgtgagtta-tgttttcttcaaaaatgaattttgagagtgatgttactatttctcatcattaccctttcttcattcataag |
45303006 |
T |
|
| Q |
281 |
gtacacaattaattaaataaaataaaaaagctttgatcgataataactgaattacgtaccaaagggggcactgttctgtatattggtaccggcgttttgg |
380 |
Q |
| |
|
|||||||||| ||||||||||||||||||| | |||||||| |||| |||||||| |||| |||| ||| | | | | ||| ||| || | |
|
|
| T |
45303007 |
gtacacaatttattaaataaaataaaaaagttgtgatcgatgataattgaattacttaccgaaggtggcggtttgcatggtcttgacaccagcagcaccg |
45303106 |
T |
|
| Q |
381 |
ttcttactaccagtgacaatggtttttgcagggccatcaccatacataagaatgttaacagcatccttggggacagtgatgtattcgtcatagacaccgg |
480 |
Q |
| |
|
||||| || || || |||||||| ||| | |||||||||||||||||||||||||||||||| || ||||| | |||||||||||| |||||||| || | |
|
|
| T |
45303107 |
ttctttcttccggtaacaatggtctttccggggccatcaccatacataagaatgttaacagcgtctttgggaatagtgatgtattcatcatagacgccag |
45303206 |
T |
|
| Q |
481 |
ccttaacgtagataacatatctgcctttg |
509 |
Q |
| |
|
|||||||||||||| ||||||||||||| |
|
|
| T |
45303207 |
ccttaacgtagatagtatatctgcctttg |
45303235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 27 - 70
Target Start/End: Original strand, 38587600 - 38587643
Alignment:
| Q |
27 |
aaagcagacatatctccttggtttctaaatgccacagcttggtg |
70 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
38587600 |
aaagcagacatgtctccttggtttctaaatgccactgcttggtg |
38587643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 462 - 507
Target Start/End: Original strand, 38583244 - 38583289
Alignment:
| Q |
462 |
tattcgtcatagacaccggccttaacgtagataacatatctgcctt |
507 |
Q |
| |
|
||||||||||||||||| ||||| |||||||| |||||||| |||| |
|
|
| T |
38583244 |
tattcgtcatagacaccagccttgacgtagatgacatatctacctt |
38583289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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