View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18905_low_5 (Length: 472)
Name: NF18905_low_5
Description: NF18905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18905_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 1 - 455
Target Start/End: Original strand, 5177977 - 5178435
Alignment:
| Q |
1 |
aaagaaaagagaatcctagtcatattttgccatttgttctccatgcaaacaaaaaaggacaacaataacacctcactaaacgtgatgaccattcattcat |
100 |
Q |
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| T |
5177977 |
aaagaaaagagaatcctagtcatattttgccatttgttctccatgcaaacaaaaaaggacaacaataacacctcactaaacgtgatgaccattcattcat |
5178076 |
T |
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| Q |
101 |
tgcatttttt-cacaccaaaaacaagtcttaacaacagaagccagctttactttccgtttctttacaaaacttcctttacaattttccctcnnnnnnngc |
199 |
Q |
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| T |
5178077 |
tgcatttttttcacaccaaaa-caagtcttaacaacagaagccagctttactttccgtttctttacaaaacttcctttacaattttccctctttttttgc |
5178175 |
T |
|
| Q |
200 |
ctttattgaataaaatttaatgtgcattaattaaagaaacaaaattttgaacataaagcaaatttacatgcaatatttggaaagagcgttaactcctagg |
299 |
Q |
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| T |
5178176 |
ctttattgaataaaatttaatgtgcattaattaaagaaacaaaattttgaacataaagcaaatttacatgcaatatttggaaagagcgttaactcctagg |
5178275 |
T |
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| Q |
300 |
agaagataaatgacactataaaatgtaacaaaagccaaagt----ttagtgatcacatattttcttccatagttaaaaatttgagagagaaaggaaaact |
395 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5178276 |
agaagataaatgacactataaaatgtaacaaaagccaaagtttagttagtgatcacatattttcttccatagttaaaaatttgagagagaaaggaaaact |
5178375 |
T |
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| Q |
396 |
tgattaatcaagctaattaactatcactccaatggccaccattgttgttcatagccaaac |
455 |
Q |
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| T |
5178376 |
tgattaatcaagctaattaactatcactccaatggccaccattgttgttcatagccaaac |
5178435 |
T |
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